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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5fljQUEQuercetinase QueD

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5fljQUEQuercetinase QueD/1.000
5fliQUEQuercetinase QueD/0.575
2xuhTZ4Acetylcholinesterase3.1.1.70.483
2rqfJH3Hemolymph juvenile hormone binding protein/0.479
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.470
4dbs0HVAldo-keto reductase family 1 member C3/0.464
2fapRADPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.455
2fapRADSerine/threonine-protein kinase mTOR2.7.11.10.455
4bfuZVUPantothenate kinase2.7.1.330.455
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.454
2z7gEH9Adenosine deaminase3.5.4.40.453
3p3zP3ZPutative cytochrome P450/0.451
4nqgCZHMitrocomin/0.451
1nsgRADPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.450
1nsgRADSerine/threonine-protein kinase mTOR2.7.11.10.450
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.446
4rlh0WEEnoyl-[acyl-carrier-protein] reductase [NADH]/0.446
1obnASVIsopenicillin N synthase1.21.3.10.444
1ry0PG2Aldo-keto reductase family 1 member C3/0.444
2dvlFADAcyl-CoA dehydrogenase/0.443
1poxFADPyruvate oxidase1.2.3.30.441
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.441
4oex5EOcGMP-specific 3',5'-cyclic phosphodiesterase/0.441
1fmjRTLRetinol dehydratase/0.440