Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5fknTDCTetracycline repressor protein class D

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5fknTDCTetracycline repressor protein class D/1.000
5fklTDCTetracycline repressor protein class D/0.542
5fkmTDCTetracycline repressor protein class D/0.527
2o7oDXTTetracycline repressor protein class D/0.521
4auxXTCTetracycline repressor protein class D/0.516
2trtTACTetracycline repressor protein class D/0.514
4b3aTACTetracycline repressor protein class D/0.509
2xpvMIYTetracycline repressor protein class D/0.506
1orkATCTetracycline repressor protein class D/0.495
2xpwOTCTetracycline repressor protein class D/0.495
2xrlDXTTetracycline repressor protein class D/0.491
4v2gITCTetracycline repressor protein class D/0.488
4abzT1CTetracycline repressor protein class D/0.473
2tctCTCTetracycline repressor protein class D/0.471
2xb5I7TTetracycline repressor protein class D/0.462
2vprTDCTetracycline repressor protein class H/0.461
2vkeTACTetracycline repressor protein class D/0.457
2xpuTDCTetracycline repressor protein class D/0.455
4d7mTDCTetracycline repressor protein class D/0.453