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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5eb5FAD(R)-mandelonitrile lyase 14.1.2.10

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5eb5FAD(R)-mandelonitrile lyase 14.1.2.101.000
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.558
4yntFDAGlucose oxidase, putative/0.484
4qi7FADCellobiose dehydrogenase/0.483
4qi5FADCellobiose dehydrogenase/0.481
1cc2FADCholesterol oxidase1.1.3.60.473
1n4uFAECholesterol oxidase1.1.3.60.470
4qi4FADCellobiose dehydrogenase/0.470
1cf3FADGlucose oxidase1.1.3.40.467
3gyiFADCholesterol oxidase1.1.3.60.462
1galFADGlucose oxidase1.1.3.40.461
1cboFADCholesterol oxidase1.1.3.60.460
4rekFADCholesterol oxidase1.1.3.60.459
1mxtFAECholesterol oxidase1.1.3.60.458
1b4vFADCholesterol oxidase1.1.3.60.454
1b8sFADCholesterol oxidase1.1.3.60.454
4u2sFDACholesterol oxidase1.1.3.60.454
3coxFADCholesterol oxidase1.1.3.60.453
1n4vFADCholesterol oxidase1.1.3.60.452
5hsaFASAlcohol oxidase 11.1.3.130.452
3gyjFADCholesterol oxidase1.1.3.60.451
4udrFAD5-(hydroxymethyl)furfural oxidase/0.451
1ijhFADCholesterol oxidase1.1.3.60.449
4udqFAD5-(hydroxymethyl)furfural oxidase/0.449
4xxgFADCholesterol oxidase1.1.3.60.448
4u2lSFDCholesterol oxidase1.1.3.60.447
4xwrFADCholesterol oxidase1.1.3.60.445