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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5dq8FLFTranscriptional enhancer factor TEF-4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
5dq8FLFTranscriptional enhancer factor TEF-4/1.000
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.527
4gb90WRPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.505
3vtdTKDVitamin D3 receptor/0.494
1l2jETCEstrogen receptor beta/0.487
4rupH97Vitamin D3 receptor A/0.485
3vrwYS5Vitamin D3 receptor/0.484
4nb6444Nuclear receptor ROR-gamma/0.484
1txiTX5Vitamin D3 receptor/0.483
3qly55VUncharacterized protein/0.482
1dkfBMSRetinoic acid receptor alpha/0.481
3vtcTK3Vitamin D3 receptor/0.480
2po7CHDFerrochelatase, mitochondrial4.99.1.10.479
3abaFLICytochrome P450/0.479
1e7aPFLSerum albumin/0.478
3ssnMVIMycinamicin VI 2''-O-methyltransferase/0.478
2hc4VDXVitamin D3 receptor A/0.476
4j03FVSBifunctional epoxide hydrolase 23.1.3.760.475
3d5qT30Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.474
4o701QKBromodomain-containing protein 4/0.474
4iui1GQEstrogen receptor/0.473
3w5p4OAVitamin D3 receptor/0.472
4hle17VPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.472
4nmbFADBifunctional protein PutA/0.472
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.471
3stv3HOMethylketone synthase I/0.470
4g1z0VPVitamin D3 receptor A/0.470
2jb4A14Isopenicillin N synthase1.21.3.10.468
3cxhSMACytochrome b/0.468
3ibdCPZCytochrome P450 2B61.14.130.468
3tk3CPZCytochrome P450 2B41.14.14.10.467
4jvb1M0Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.467
1ndeMONEstrogen receptor beta/0.466
2hw2RFPRifampin ADP-ribosyl transferase/0.466
1ezvSMACytochrome b/0.465
1p44GEQEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.465
1rk3VDXVitamin D3 receptor/0.465
2zbaZBATrichothecene 3-O-acetyltransferase/0.465
4ia3BIVVitamin D3 receptor A/0.465
3eej53RUncharacterized protein/0.464
3is9AC7Gag-Pol polyprotein2.7.7.490.464
3qlxQLRUncharacterized protein/0.464
5cp8TCUEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.464
1ie8KH1Vitamin D3 receptor/0.463
2hamC33Vitamin D3 receptor/0.463
3l0lHC3Nuclear receptor ROR-gamma/0.463
3vruYS3Vitamin D3 receptor/0.463
4fhh0U3Vitamin D3 receptor A/0.463
4myq19TcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.463
4ezj0SCPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.462
4fjz4FJPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.462
4j6dTESCytochrome P450 monooxygenase/0.462
1cjcFADNADPH:adrenodoxin oxidoreductase, mitochondrial1.18.1.60.461
3w5rLOAVitamin D3 receptor/0.461
4anuEM7Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.461
4g210VPVitamin D3 receptor A/0.461
4hw319GInduced myeloid leukemia cell differentiation protein Mcl-1/0.461
4xuhSFIPeroxisome proliferator-activated receptor gamma/0.461
1uzwCDHIsopenicillin N synthase1.21.3.10.460
3och2MXDihydrofolate reductase1.5.1.30.460
3vtbTKAVitamin D3 receptor/0.460
4h9506UDihydrofolate reductase1.5.1.30.460
4jx1CAMCamphor 5-monooxygenase1.14.15.10.460
1hk5T44Serum albumin/0.459
1kb9SMACytochrome b/0.459
2hb7O1CVitamin D3 receptor/0.459
2iogIOGEstrogen receptor/0.459
2hasC3OVitamin D3 receptor/0.458
2hbhXE4Vitamin D3 receptor A/0.458
2vbpVB1Isopenicillin N synthase1.21.3.10.458
3lu8IQXSerum albumin/0.458
3vt45YIVitamin D3 receptor/0.458
4g1d0VKVitamin D3 receptor A/0.458
2w3vTOPDihydrofolate reductase/0.457
3byzH11Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.457
3fcoIIGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.457
3kjsDQ1Bifunctional dihydrofolate reductase-thymidylate synthase/0.457
3reyXACAdenosine receptor A2a/0.457
1j7uANPAminoglycoside 3'-phosphotransferase2.7.1.950.456
1kyoSMACytochrome b/0.456
1mvsDTMDihydrofolate reductase1.5.1.30.456
1qiqACCIsopenicillin N synthase1.21.3.10.456
2fziDH3Dihydrofolate reductase1.5.1.30.456
3cx5SMACytochrome b/0.456
3nga3NGCasein kinase II subunit alpha2.7.11.10.456
3p6nDSOCamphor 5-monooxygenase1.14.15.10.456
3sgtP09Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)/0.456
4ej7ATPAminoglycoside 3'-phosphotransferase AphA1-IAB/0.456
4g1y0VOVitamin D3 receptor A/0.456
4g2h0VQVitamin D3 receptor A/0.456
4ia1BIVVitamin D3 receptor A/0.456
1rkhVD2Vitamin D3 receptor/0.455
1sejF89Bifunctional dihydrofolate reductase-thymidylate synthase/0.455
2c3qGTXGlutathione S-transferase theta-12.5.1.180.455
2wleCOAPolysialic acid O-acetyltransferase/0.455
2yiuSMACytochrome b/0.455
3kpzZNEVitamin D3 receptor/0.455
3up3XCAaceDAF-12/0.455
3zoiM2WIsopenicillin N synthase1.21.3.10.455
1cbrREACellular retinoic acid-binding protein 1/0.454
1ia3TQ5Dihydrofolate reductase1.5.1.30.454
1kk4ACOStreptogramin A acetyltransferase2.3.10.454
1uykPUXHeat shock protein HSP 90-alpha/0.454
2o4rVD5Vitamin D3 receptor/0.454
3dxjNE6DNA-directed RNA polymerase subunit beta/0.454
3dxjNE6DNA-directed RNA polymerase subunit beta'/0.454
3q0gBCOProbable enoyl-CoA hydratase echA84.2.1.170.454
3vt65YIVitamin D3 receptor/0.454
4jv618FRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.454
4oxyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.454
1rjkVDZVitamin D3 receptor/0.453
1xu9CPSCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.453
2bu9HFVIsopenicillin N synthase1.21.3.10.453
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.453
3jqpA2PFerredoxin--NADP reductase, apicoplast/0.453
3mqe416Prostaglandin G/H synthase 21.14.99.10.453
3zw3ZW3Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.453
4fhi0S4Vitamin D3 receptor A/0.453
4xwtU5PRibonuclease J/0.453
1ot7CHCBile acid receptor/0.452
1s0zEB1Vitamin D3 receptor/0.452
2iviACWIsopenicillin N synthase1.21.3.10.452
3negPYVAbscisic acid receptor PYL1/0.452
3vt3VDXVitamin D3 receptor/0.452
3vt7VDXVitamin D3 receptor/0.452
3w0jT08Vitamin D3 receptor/0.452
4ezk0SDPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.452
4r20AERCytochrome P450 family 17 polypeptide 2/0.452
1j3iWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.451
2dqsTG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.451
3gc9B45Mitogen-activated protein kinase 112.7.11.240.451
3p6oETGCamphor 5-monooxygenase1.14.15.10.451
3qlhT27Gag-Pol polyprotein2.7.7.490.451
3u8hBHPPhospholipase A2, membrane associated/0.451
3vt8YI3Vitamin D3 receptor/0.451
3vt9YI4Vitamin D3 receptor/0.451
3w5tLHPVitamin D3 receptor/0.451
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.451
4jvlESTEstrogen sulfotransferase2.8.2.40.451
1bk0ACVIsopenicillin N synthase1.21.3.10.450
1db1VDXVitamin D3 receptor/0.450
1e7vLY2Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.450
1qxlFR8Adenosine deaminase3.5.4.40.450
2hb8MVDVitamin D3 receptor/0.450
2ibzSMACytochrome b/0.450
2iltNN1Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.450
2vcmM11Isopenicillin N synthase1.21.3.10.450
3mdvCL6Cholesterol 24-hydroxylase/0.450
4iarERM5-hydroxytryptamine receptor 1B/0.450
4qa2SHHHistone deacetylase 83.5.1.980.450
3pwhZMAAdenosine receptor A2a/0.450
1hk4T44Serum albumin/0.449
1j3kWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.449
1kyzFERCaffeic acid 3-O-methyltransferase2.1.1.680.449
2hnzPC0Gag-Pol polyprotein2.7.7.490.449
3dl9V2HVitamin D 25-hydroxylase/0.449
3eel53TUncharacterized protein/0.449
3h6k33TCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.449
3w0gW07Vitamin D3 receptor/0.449
3w1wCHDFerrochelatase, mitochondrial4.99.1.10.449
1nq7ARLNuclear receptor ROR-beta/0.448
1ysx4EBSerum albumin/0.448
2fzhDH1Dihydrofolate reductase1.5.1.30.448
2y6fM9FIsopenicillin N synthase1.21.3.10.448
2ykeYKEHeat shock protein HSP 90-alpha/0.448
3eem53VUncharacterized protein/0.448
3fgoCZASarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.448
3gytDL4Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily/0.448
4fad0TBPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.448
4iteTEYVitamin D3 receptor/0.448
4j6cSTRCytochrome P450 monooxygenase/0.448
1draMTXDihydrofolate reductase1.5.1.30.447
1fm69CRRetinoic acid receptor RXR-alpha/0.447
1ly3COGDihydrofolate reductase1.5.1.30.447
1oc1ASVIsopenicillin N synthase1.21.3.10.447
1pd9CO4Dihydrofolate reductase1.5.1.30.447
1vrwNAIEnoyl-ACP reductase/0.447
2ze2T27Gag-Pol polyprotein2.7.7.490.447
3fr0AJBGlucokinase2.7.1.20.447
3ol5SAWCamphor 5-monooxygenase1.14.15.10.447
3r6pA8SAbscisic acid receptor PYL10/0.447
3vev0H4Glucokinase2.7.1.20.447
4bb6HD1Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.447
4hni16WCasein kinase I isoform epsilon2.7.11.10.447
4iae1DXAlr2278 protein/0.447
4uhrNGIAdenosine receptor A2a/0.447
1dr3HBIDihydrofolate reductase1.5.1.30.446
1e1kFADNADPH:adrenodoxin oxidoreductase, mitochondrial1.18.1.60.446
1ie9VDXVitamin D3 receptor/0.446
1wrlTFPTroponin C, slow skeletal and cardiac muscles/0.446
2j0dERYCytochrome P450 3A4/0.446
2vbdV10Isopenicillin N synthase1.21.3.10.446
3lfcZ86Mitogen-activated protein kinase 14/0.446
3vrvYSDVitamin D3 receptor/0.446
4l8u9AZSerum albumin/0.446
1dubCAAEnoyl-CoA hydratase, mitochondrial4.2.1.170.445
1e1nFADNADPH:adrenodoxin oxidoreductase, mitochondrial1.18.1.60.445
1siqFADGlutaryl-CoA dehydrogenase, mitochondrial1.3.8.60.445
2o4jVD4Vitamin D3 receptor/0.445
3apfBMWPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.445
3cseN22Uncharacterized protein/0.445
3h1jSMACytochrome b/0.445
3njoP2MAbscisic acid receptor PYR1/0.445
3zcw4A2Kinesin-like protein KIF11/0.445
4q0a4OAVitamin D3 receptor A/0.445
1fmlRTLRetinol dehydratase/0.444
1ie4T44Transthyretin/0.444
2fwyH64Heat shock protein HSP 90-alpha/0.444
3a0iAJIGlucokinase2.7.1.20.444
3iaeD7KBenzaldehyde lyase/0.444
3nrrD16Bifunctional dihydrofolate reductase-thymidylate synthase/0.444
3opdHIEHeat shock protein 83/0.444
3oq13OQCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.444
3pqbVGPPutative oxidoreductase/0.444
3s2a2NQPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.444
3zbnCOA3-ketoacyl-CoA thiolase-like protein/0.444
4b13NHWGlycylpeptide N-tetradecanoyltransferase/0.444
4h9614QDihydrofolate reductase1.5.1.30.444
4ia7BIVVitamin D3 receptor A/0.444
4iaq2GM5-hydroxytryptamine receptor 1B/0.444
4nieNBHNuclear receptor ROR-gamma/0.444
4nkvAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.444
4okb198Androgen receptor/0.444
4ruoBIVVitamin D3 receptor A/0.444
1j39UPGDNA beta-glucosyltransferase/0.443
1kkq471Peroxisome proliferator-activated receptor alpha/0.443
1pkfEPDEpothilone C/D epoxidase1.140.443
1re9DSOCamphor 5-monooxygenase1.14.15.10.443
1uhlMEIRetinoic acid receptor RXR-beta/0.443
1w06W05Isopenicillin N synthase1.21.3.10.443
2cdz23DSerine/threonine-protein kinase PAK 42.7.11.10.443
2uxoTACHTH-type transcriptional regulator TtgR/0.443
2zlaVDBVitamin D3 receptor/0.443
2zlcVDXVitamin D3 receptor/0.443
3fnhJPJEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.443
3kytHC2Nuclear receptor ROR-gamma/0.443
3q0gCOAProbable enoyl-CoA hydratase echA84.2.1.170.443
3qclNXVReceptor-type tyrosine-protein phosphatase gamma3.1.3.480.443
4bb5HD2Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.443
1e1mFADNADPH:adrenodoxin oxidoreductase, mitochondrial1.18.1.60.442
1kvoOAPPhospholipase A2, membrane associated/0.442
1uydPU8Heat shock protein HSP 90-alpha/0.442
1uyePU9Heat shock protein HSP 90-alpha/0.442
2harOCCVitamin D3 receptor/0.442
2vn0TDZCytochrome P450 2C8/0.442
3irxUDRGag-Pol polyprotein2.7.7.490.442
3qm4PN0Cytochrome P450 2D6/0.442
3s7a684Dihydrofolate reductase1.5.1.30.442
3sgx0FWDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.442
4cd2FOLDihydrofolate reductase1.5.1.30.442
4kodADPTransitional endoplasmic reticulum ATPase3.6.4.60.442
1osvCHCBile acid receptor/0.441
1qknRALEstrogen receptor beta/0.441
1s0xC3SNuclear receptor ROR-alpha/0.441
1sqvUHDCytochrome b/0.441
1v7aFRCAdenosine deaminase3.5.4.40.441
1w22NHBHistone deacetylase 83.5.1.980.441
2c7xNRBCytochrome P450 monooxygenase PikC/0.441
2nq8ZIDEnoyl-ACP reductase/0.441
2xynVX6Abelson tyrosine-protein kinase 22.7.10.20.441
2zl9VDAVitamin D3 receptor/0.441
3inwJZBHeat shock protein HSP 90-alpha/0.441
3qk0QK0Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.441
3sgv2BJDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.441
3sn7540cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.441
4nh82LCHeat shock protein HSP 90-alpha/0.441
4trnNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.441
1bvrTHTEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.440
1dhjMTXDihydrofolate reductase1.5.1.30.440
1nbmADPATP synthase subunit beta, mitochondrial3.6.3.140.440
1ybgTAVUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.440
2ca0PXICytochrome P450 monooxygenase PikC/0.440
2y60M8FIsopenicillin N synthase1.21.3.10.440
3d7kD7KBenzaldehyde lyase/0.440
3srqQ19Dihydrofolate reductase1.5.1.30.440
4dhyS41Glucokinase2.7.1.20.440
4hw219HInduced myeloid leukemia cell differentiation protein Mcl-1/0.440
4j6bPLOCytochrome P450 monooxygenase/0.440
5djuFMNNPH1-2/0.440