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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5d5bCAUBeta-2 adrenergic receptor

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5d5bCAUBeta-2 adrenergic receptor/1.000
5d6lCAUBeta-2 adrenergic receptor/0.660
2rh1CAUBeta-2 adrenergic receptor/0.649
5jqhCAUBeta-2 adrenergic receptor/0.622
4gbrCAUBeta-2 adrenergic receptor/0.615
3ny9JSZBeta-2 adrenergic receptor/0.609
3d4sTIMBeta-2 adrenergic receptor/0.590
2yczI32Beta-1 adrenergic receptor/0.589
2ycxP32Beta-1 adrenergic receptor/0.586
2ycyP32Beta-1 adrenergic receptor/0.586
4amjCVDBeta-1 adrenergic receptor/0.577
2ycwCAUBeta-1 adrenergic receptor/0.564
4amiG90Beta-1 adrenergic receptor/0.563
4ldeP0GBeta-2 adrenergic receptor/0.563
3ny8JRZBeta-2 adrenergic receptor/0.560
3nyaJTZBeta-2 adrenergic receptor/0.554
5a8eXTKBeta-1 adrenergic receptor/0.543
4bvnP32Beta-1 adrenergic receptor/0.531
5f8uP32Beta-1 adrenergic receptor/0.525
2y01Y00Beta-1 adrenergic receptor/0.523
2y0468HBeta-1 adrenergic receptor/0.523
5d5aCAUBeta-2 adrenergic receptor/0.522
2vt4P32Beta-1 adrenergic receptor/0.516
2y02WHJBeta-1 adrenergic receptor/0.504
2y035FWBeta-1 adrenergic receptor/0.499
4iarERM5-hydroxytryptamine receptor 1B/0.497
3zpqXF5Beta-1 adrenergic receptor/0.493
4ldlXQCBeta-2 adrenergic receptor/0.470
3sn6P0GBeta-2 adrenergic receptor/0.465
3p0gP0GBeta-2 adrenergic receptor/0.447