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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5d1bTSNHistone deacetylase 83.5.1.98

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5d1bTSNHistone deacetylase 83.5.1.981.000
4qa1B3NHistone deacetylase 83.5.1.980.575
4qa2SHHHistone deacetylase 83.5.1.980.569
3ezpB3NHistone deacetylase 83.5.1.980.553
5dc5B3NHistone deacetylase 83.5.1.980.541
4qa0SHHHistone deacetylase 83.5.1.980.539
2v5xV5XHistone deacetylase 83.5.1.980.495
1w22NHBHistone deacetylase 83.5.1.980.471