scPDB - Distribution of Binding site Similarity values of 5ccx entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
5ccx	SAH	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A	2.1.1.220

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
5ccx	SAH	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A	2.1.1.220	1.000
5ccb	SAH	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A	2.1.1.220	0.576
4ymg	SAM	Putative SAM-dependent O-methyltranferase	/	0.487
3t7o	UPG	Glycogenin-1	2.4.1.186	0.473
1siq	FAD	Glutaryl-CoA dehydrogenase, mitochondrial	1.3.8.6	0.471
2dpm	SAM	Modification methylase DpnIIA	2.1.1.72	0.462
3up3	XCA	aceDAF-12	/	0.459
7mht	SAH	Modification methylase HhaI	2.1.1.37	0.458
2pwy	SAH	tRNA (adenine(58)-N(1))-methyltransferase TrmI	2.1.1.220	0.456
2zcj	SAH	Modification methylase HhaI	2.1.1.37	0.450
4ft4	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.450
3ldg	SAH	Uncharacterized protein	/	0.445
3mht	SAH	Modification methylase HhaI	2.1.1.37	0.443
3lga	SAH	tRNA (adenine(57)-N(1)/adenine(58)-N(1))-methyltransferase TrmI	2.1.1.219	0.442
4nt3	ZAW	Lactoperoxidase	1.11.1.7	0.442