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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5cb4ACPTubulin tyrosine ligase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
5cb4ACPTubulin tyrosine ligase/1.000
5c8yACPTubulin tyrosine ligase/0.628
5ca0ACPTubulin tyrosine ligase/0.627
4zolACPTubulin tyrosine ligase/0.590
4zhqACPTubulin tyrosine ligase/0.549
1iidNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.496
4dpuAGSMevalonate diphosphate decarboxylase/0.496
5cwa0GAAnthranilate synthase component 14.1.3.270.489
2ghlLIBMitogen-activated protein kinase 14/0.484
3ibqATPPyridoxal kinase/0.481
4e5yNDPGDP-L-fucose synthase1.1.1.2710.479
1bygSTUTyrosine-protein kinase CSK/0.477
1e7vLY2Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.475
2iw94SPCyclin-dependent kinase 22.7.11.220.474
4ijp1EHSerine/threonine-protein kinase PRP4 homolog2.7.11.10.473
2chx090Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.471
4yr9NADL-threonine 3-dehydrogenase, mitochondrial1.1.1.1030.471
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.470
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.470
1bwsNDPGDP-L-fucose synthase/0.469
4tuvCPZCytochrome P450 1191.140.469
1r2jFADFkbI/0.468
4hvb19PPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.468
2cppCAMCamphor 5-monooxygenase1.14.15.10.467
3flwFLWMitogen-activated protein kinase 14/0.467
1nzdUPGDNA beta-glucosyltransferase/0.466
1zeoC01Peroxisome proliferator-activated receptor gamma/0.466
2dvlFADAcyl-CoA dehydrogenase/0.466
2g37FADProline dehydrogenase/0.466
2wotZZGTGF-beta receptor type-12.7.11.300.466
4o4iACPTubulin tyrosine ligase/0.466
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.465
1zrzBI1Protein kinase C iota type2.7.11.130.465
1fmlRTLRetinol dehydratase/0.464
2uzbC75Cyclin-dependent kinase 22.7.11.220.464
3hyoADPPyridoxal kinase/0.464
3inmNDPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.464
5j23A2RPutative 2-hydroxyacid dehydrogenase/0.464
3lfqA28Cyclin-dependent kinase 22.7.11.220.463
4o0rX4ZSerine/threonine-protein kinase PAK 12.7.11.10.463
1cg4IMOAdenylosuccinate synthetase/0.462
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.462
2qo9ANPEphrin type-A receptor 32.7.10.10.462
2rkvZBATrichothecene 3-O-acetyltransferase/0.462
1u54ACPActivated CDC42 kinase 1/0.461
2iw6QQ2Cyclin-dependent kinase 22.7.11.220.461
4fr4STUSerine/threonine-protein kinase 32A2.7.11.10.461
4xcvNDPProbable hydroxyacid dehydrogenase protein/0.461
3dpd41APhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.460
4anwO92Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.460
4oh4ANPProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.460
2r0cFADPutative FAD-monooxygenase/0.459
2vn0TDZCytochrome P450 2C8/0.459
3ddpRC8Cyclin-dependent kinase 22.7.11.220.459
3eljGS7Mitogen-activated protein kinase 82.7.11.240.459
4ly91YYGlucokinase regulatory protein/0.459
2chz093Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.458
2j3jHC4NADPH-dependent oxidoreductase 2-alkenal reductase1.3.1.740.457
2phkATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform2.7.11.190.457
2v4lABJPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.457
3cd3STUTyrosine-protein kinase Fes/Fps2.7.10.20.457
3ddqRRCCyclin-dependent kinase 22.7.11.220.457
3oev3OEProteasome subunit beta type-53.4.25.10.457
3oev3OEProteasome subunit beta type-63.4.25.10.457
4cp4CAMCamphor 5-monooxygenase1.14.15.10.457
4gk2L66Ephrin type-A receptor 32.7.10.10.457
4gk3L87Ephrin type-A receptor 32.7.10.10.457
4mv1ADPBiotin carboxylase6.3.4.140.457
2bfyH1NAurora kinase B-A2.7.11.10.456
2brbPFQSerine/threonine-protein kinase Chk12.7.11.10.456
2c6tDT5Cyclin-dependent kinase 22.7.11.220.456
3nd1SAHPrecorrin-6A synthase (Deacetylating)/0.456
4iwq1FVSerine/threonine-protein kinase TBK12.7.11.10.456
4kbk1QGCasein kinase I isoform delta2.7.11.10.456
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.455
2i4jDRJPeroxisome proliferator-activated receptor gamma/0.455
2z97CAMCamphor 5-monooxygenase1.14.15.10.455
3sheI85MAP kinase-activated protein kinase 32.7.11.10.455
4iwo1H4Serine/threonine-protein kinase TBK12.7.11.10.455
1c70L75Protease/0.454
2v9jATP5'-AMP-activated protein kinase subunit gamma-1/0.454
3cukFADD-amino-acid oxidase1.4.3.30.454
3dds26BGlycogen phosphorylase, liver form2.4.1.10.454
3hx4ANPCalmodulin-domain protein kinase 1/0.454
3pre3REPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.454
3zewSTUEphrin type-B receptor 42.7.10.10.454
4anv751Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.454
4eakATP5'-AMP-activated protein kinase subunit gamma-1/0.454
4l0qNADAlcohol dehydrogenase class-3/0.454
1e8wQUEPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.453
1e90MYCPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.453
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.453
4fuyEK2Mitogen-activated protein kinase 12.7.11.240.453
1bsvNDPGDP-L-fucose synthase/0.452
1kkq471Peroxisome proliferator-activated receptor alpha/0.452
1merDMQGag-Pol polyprotein3.4.23.160.452
1u3dFADCryptochrome-1/0.452
2i0y5CNMacrophage colony-stimulating factor 1 receptor2.7.10.10.452
3apfBMWPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.452
3k5uPFQAurora kinase A2.7.11.10.452
3pe6ZYHMonoglyceride lipase/0.452
4bf2STUMitogen-activated protein kinase kinase kinase 52.7.11.250.452
4gb90WRPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.452
1gqtACPRibokinase/0.451
1o9bNAIQuinate/shikimate dehydrogenase/0.451
1ptjSNDNAD(P) transhydrogenase subunit alpha part 11.6.1.20.451
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.451
2ejvNADL-threonine 3-dehydrogenase/0.451
2pym1UNGag-Pol polyprotein3.4.23.160.451
2y6o1N1Ephrin type-A receptor 42.7.10.10.451
2zdt46CMitogen-activated protein kinase 102.7.11.240.451
3a4oSTUTyrosine-protein kinase Lyn2.7.10.20.451
3fln3FNMitogen-activated protein kinase 14/0.451
3mpjFADGlutaryl-CoA dehydrogenase1.3.99.320.451
3qqkX02Cyclin-dependent kinase 22.7.11.220.451
3s2a2NQPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.451
3u9eCOALmo1369 protein/0.451
4m9aFDAAcyl-CoA dehydrogenase/0.451
4nxwADPMitochondrial dynamics protein MID51/0.451
4o63NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.451
4q73FADBifunctional protein PutA/0.451
4qmwKS1Serine/threonine-protein kinase 242.7.11.10.451
5itzLOCTubulin beta-2B chain/0.451
5la6ACPTubulin tyrosine ligase/0.451
1e8zSTUPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.450
2amaDHTAndrogen receptor/0.450
2fvdLIACyclin-dependent kinase 22.7.11.220.450
2wouZZFTGF-beta receptor type-12.7.11.300.450
2zbaZBATrichothecene 3-O-acetyltransferase/0.450
3uli1N3Cyclin-dependent kinase 22.7.11.220.450
4dpy2P0Mevalonate diphosphate decarboxylase/0.450
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.449
1u4dDBQActivated CDC42 kinase 1/0.449
1u5rATPSerine/threonine-protein kinase TAO22.7.11.10.449
2biyATP3-phosphoinositide-dependent protein kinase 12.7.11.10.449
2uznC96Cyclin-dependent kinase 22.7.11.220.449
3el4ROCGag-Pol polyprotein3.4.23.160.449
3ey9TDPPyruvate dehydrogenase [ubiquinone]1.2.5.10.449
3mqe416Prostaglandin G/H synthase 21.14.99.10.449
4c3f7KWTyrosine-protein kinase Lck2.7.10.20.449
4gk4L90Ephrin type-A receptor 32.7.10.10.449
4uyf73BBromodomain-containing protein 2/0.449
4xgxADPFAD:protein FMN transferase/0.449
5ackATP3-phosphoinositide-dependent protein kinase 12.7.11.10.449
9hvp0E9Gag-Pol polyprotein/0.449
1a72PADAlcohol dehydrogenase E chain1.1.1.10.448
1hquHBYGag-Pol polyprotein2.7.7.490.448
3n7uNADFormate dehydrogenase, chloroplastic/mitochondrial/0.448
3rk909ZCyclin-dependent kinase 22.7.11.220.448
3triNAPPyrroline-5-carboxylate reductase/0.448
3wdlATP4-phosphopantoate--beta-alanine ligase6.3.2.360.448
4a06ATP3-phosphoinositide-dependent protein kinase 12.7.11.10.448
4eutBX7Serine/threonine-protein kinase TBK12.7.11.10.448
4tv3ML9Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform/0.448
1siqFADGlutaryl-CoA dehydrogenase, mitochondrial1.3.8.60.447
1v0pPVBCell division control protein 2 homolog2.7.11.220.447
2ic3HBYGag-Pol polyprotein2.7.7.490.447
2vx07X7Ephrin type-B receptor 42.7.10.10.447
2xuuADPDeath-associated protein kinase 12.7.11.10.447
3hrfATP3-phosphoinositide-dependent protein kinase 12.7.11.10.447
3hz5Z64Heat shock protein HSP 90-alpha/0.447
3kgaLX9MAP kinase-activated protein kinase 22.7.11.10.447
3r9hZ67Cyclin-dependent kinase 22.7.11.220.447
4hbm0Y7E3 ubiquitin-protein ligase Mdm26.3.20.447
4jbqVX6Aurora kinase A2.7.11.10.447
4nxvGDPMitochondrial dynamics protein MID51/0.447
4rqvATP3-phosphoinositide-dependent protein kinase 12.7.11.10.447
4x30T44Thyroxine-binding globulin/0.447
5c8wPCGcGMP-dependent protein kinase 22.7.11.120.447
3qakUKAAdenosine receptor A2a/0.447
1c6x3INProtease/0.446
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.446
1qpdSTUTyrosine-protein kinase Lck2.7.10.20.446
2brnDF1Serine/threonine-protein kinase Chk12.7.11.10.446
3gbuATPUncharacterized sugar kinase PH14592.7.10.446
3hadNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.446
3rni21ZCyclin-dependent kinase 22.7.11.220.446
4bb3KKAIsopenicillin N synthase1.21.3.10.446
4bbe3O4Tyrosine-protein kinase JAK2/0.446
4h8aNAIUreidoglycolate dehydrogenase (NAD(+))1.1.1.3500.446
4jvf17XRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.446
4xx9ATP3-phosphoinositide-dependent protein kinase 12.7.11.10.446
5e8wSTUTGF-beta receptor type-12.7.11.300.446
1dnpFADDeoxyribodipyrimidine photo-lyase4.1.99.30.445
1e8xATPPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.445
1ia3TQ5Dihydrofolate reductase1.5.1.30.445
1qpjSTUTyrosine-protein kinase Lck2.7.10.20.445
1uu9BI33-phosphoinositide-dependent protein kinase 12.7.11.10.445
1uy8PU5Heat shock protein HSP 90-alpha/0.445
2e9uA25Serine/threonine-protein kinase Chk12.7.11.10.445
3ac1KZITyrosine-protein kinase Lck2.7.10.20.445
3r1sX73Cyclin-dependent kinase 22.7.11.220.445
3w4yFADMitochondrial FAD-linked sulfhydryl oxidase ERV11.8.3.20.445
4riyADPEpidermal growth factor receptor2.7.10.10.445
4wboANWRhodopsin kinase/0.445
4y9lFADAcyl-CoA dehydrogenase family member 11/0.445
5cnnANPEpidermal growth factor receptor2.7.10.10.445
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.444
1u3cFADCryptochrome-1/0.444
1xl2189Gag-Pol polyprotein3.4.23.160.444
2ceoT44Thyroxine-binding globulin/0.444
2dq7STUTyrosine-protein kinase Fyn2.7.10.20.444
2i4pDRHPeroxisome proliferator-activated receptor gamma/0.444
2qn7HBZGlycogen phosphorylase, muscle form2.4.1.10.444
2r3wG3GGag-Pol polyprotein3.4.23.160.444
2w05FRTCyclin-dependent kinase 22.7.11.220.444
3ge1ADPGlycerol kinase/0.444
4fhk0U0Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.444
4gmy0X5Tyrosine-protein kinase JAK2/0.444
4jlcSU6Serine/threonine-protein kinase TBK12.7.11.10.444
5f8eSAHPossible transcriptional regulatory protein/0.444
1bdlIM1Gag-Pol polyprotein3.4.23.160.443
1ida0POGag-Pol polyprotein3.4.23.470.443
1tl7FOKAdenylate cyclase type 2/0.443
1tl7FOKAdenylate cyclase type 5/0.443
2tpsTPSThiamine-phosphate synthase/0.443
2z4sADPChromosomal replication initiator protein DnaA/0.443
3gqvNAPEnoyl reductase LovC10.443
3ortAGSSerine/threonine protein kinase/0.443
3pxkPXKFocal adhesion kinase 12.7.10.20.443
3sc13S13-phosphoinositide-dependent protein kinase 12.7.11.10.443
4btjATPTau-tubulin kinase 12.7.11.10.443
4ewhT77Activated CDC42 kinase 1/0.443
4i6aHMG3-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.880.443
4jajXU1Aurora kinase A2.7.11.10.443
4jjiNADAlcohol dehydrogenase class-3/0.443
4mxxDB8Proto-oncogene tyrosine-protein kinase Src2.7.10.20.443
4nr42LKCREB-binding protein/0.443
4rqkATP3-phosphoinositide-dependent protein kinase 12.7.11.10.443
4zasTYDCalS13/0.443
1di8DTQCyclin-dependent kinase 22.7.11.220.442
1f17NAIHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.442
1fxsNAPGDP-L-fucose synthase/0.442
1g4tFTPThiamine-phosphate synthase/0.442
1jpaANPEphrin type-B receptor 22.7.10.10.442
1nytNAPShikimate dehydrogenase (NADP(+))/0.442
1nzfUPGDNA beta-glucosyltransferase/0.442
2excJNKMitogen-activated protein kinase 102.7.11.240.442
3be9P04Casein kinase II subunit alpha2.7.11.10.442
3cgeNDPCoenzyme A disulfide reductase/0.442
3il1B5DGlutamate receptor 2/0.442
3t113T1Gag-Pol polyprotein3.4.23.160.442
4q71FADBifunctional protein PutA/0.442
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.442
5cvhADPCasein kinase II subunit alpha2.7.11.10.442
1gg5FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441
1npvL27Gag-Pol polyprotein3.4.23.160.441
1o0sNAINAD-dependent malic enzyme, mitochondrial1.1.1.380.441
1odw0E8Gag-Pol polyprotein3.4.23.160.441
1yvj4STTyrosine-protein kinase JAK32.7.10.20.441
2eb3ANPEpidermal growth factor receptor2.7.10.10.441
2etm7PYFocal adhesion kinase 12.7.10.20.441
2q61SF1Peroxisome proliferator-activated receptor gamma/0.441
2vtbFADCryptochrome DASH, chloroplastic/mitochondrial/0.441
2wtiWTISerine/threonine-protein kinase Chk22.7.11.10.441
2yexYEXSerine/threonine-protein kinase Chk12.7.11.10.441
2znq401Peroxisome proliferator-activated receptor delta/0.441
3op5REBSerine/threonine-protein kinase VRK12.7.11.10.441
4asyN5YGlucose-1-phosphate thymidylyltransferase/0.441
4bcnT9NCyclin-dependent kinase 22.7.11.220.441
4cfnJYMCyclin-dependent kinase 22.7.11.220.441
4fad0TBPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.441
4o1pANPRibonuclease L/0.441
4y95746Tyrosine-protein kinase/0.441
1dxqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.440
1xddAAYIntegrin alpha-L/0.440
2brmDFZSerine/threonine-protein kinase Chk12.7.11.10.440
2o0uC0MMitogen-activated protein kinase 102.7.11.240.440
2r43G3GGag-Pol polyprotein3.4.23.160.440
2v7a627Tyrosine-protein kinase ABL12.7.10.20.440
2yyiFAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component1.14.14.90.440
3a99ANPSerine/threonine-protein kinase pim-12.7.11.10.440
3cppCAMCamphor 5-monooxygenase1.14.15.10.440
3dmhSAMProbable ribosomal RNA small subunit methyltransferase/0.440
3gfbNADL-threonine 3-dehydrogenase/0.440
3inxJZCHeat shock protein HSP 90-alpha/0.440
3nuuJOZ3-phosphoinositide-dependent protein kinase 12.7.11.10.440
3ttiKBIMitogen-activated protein kinase 102.7.11.240.440
3we45FIRibosomal protein S6 kinase beta-12.7.11.10.440
4feq0T8Tyrosine-protein kinase receptor TYRO32.7.10.10.440
4oal245Cytokinin dehydrogenase 4/0.440
4qmxH8HSerine/threonine-protein kinase 242.7.11.10.440