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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5ag5MYAGlycylpeptide N-tetradecanoyltransferase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5ag5MYAGlycylpeptide N-tetradecanoyltransferase/1.000
5ag7MYAGlycylpeptide N-tetradecanoyltransferase/0.838
5ag6MYAGlycylpeptide N-tetradecanoyltransferase/0.826
4a30MYAGlycylpeptide N-tetradecanoyltransferase/0.816
4a33MYAGlycylpeptide N-tetradecanoyltransferase/0.805
4a32MYAGlycylpeptide N-tetradecanoyltransferase/0.778
4a31MYAGlycylpeptide N-tetradecanoyltransferase/0.732
5a27MYAGlycylpeptide N-tetradecanoyltransferase/0.712
4a2zMYAGlycylpeptide N-tetradecanoyltransferase/0.668
4cgpMYAGlycylpeptide N-tetradecanoyltransferase/0.665
4c2xNHWGlycylpeptide N-tetradecanoyltransferase 2/0.653
4b12NHWGlycylpeptide N-tetradecanoyltransferase/0.650
2yneNHWGlycylpeptide N-tetradecanoyltransferase/0.640
4a95NHWGlycylpeptide N-tetradecanoyltransferase/0.633
4b14NHWGlycylpeptide N-tetradecanoyltransferase/0.633
4b10NHWGlycylpeptide N-tetradecanoyltransferase/0.631
4b13NHWGlycylpeptide N-tetradecanoyltransferase/0.624
2nmtNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.616
4ucnMYAGlycylpeptide N-tetradecanoyltransferase/0.576
4bbhNHWGlycylpeptide N-tetradecanoyltransferase/0.528
2wsaMYAGlycylpeptide N-tetradecanoyltransferase/0.527
5a28MYAGlycylpeptide N-tetradecanoyltransferase/0.526
4c2yMYAGlycylpeptide N-tetradecanoyltransferase 1/0.522
2wuuNHWGlycylpeptide N-tetradecanoyltransferase/0.514
4c68NHWGlycylpeptide N-tetradecanoyltransferase/0.506
2yncYNCGlycylpeptide N-tetradecanoyltransferase/0.504
4c2zMYAGlycylpeptide N-tetradecanoyltransferase 1/0.502
4b11NHWGlycylpeptide N-tetradecanoyltransferase/0.498
4caxMYAGlycylpeptide N-tetradecanoyltransferase2.3.1.970.493
1iidNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.466
5bp9SAHPutative methyltransferase protein/0.464
4qbjNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.463
3wmxNADNAD dependent epimerase/dehydratase/0.457
4cavMYAGlycylpeptide N-tetradecanoyltransferase2.3.1.970.456
3t8xT8XT-cell surface glycoprotein CD1b/0.455
3jynNDPQuinone oxidoreductase/0.445
4j6cSTRCytochrome P450 monooxygenase/0.444
5br4NADLactaldehyde reductase1.1.1.770.443
3pwhZMAAdenosine receptor A2a/0.442
4ktl1CQCytochrome P450/0.441