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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4z9rFMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4z9rFMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD/1.000
4yx6FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD/0.552
4cw5FMNDfnA/0.498
4z38FMNMlnA/0.494
4iqlFMNEnoyl-(Acyl-carrier-protein) reductase II/0.479
4eakATP5'-AMP-activated protein kinase subunit gamma-1/0.465
3bbrBHYGlutamate receptor 2/0.461
1ofeFMNFerredoxin-dependent glutamate synthase 21.4.7.10.459
1lm1FMNFerredoxin-dependent glutamate synthase 21.4.7.10.458
3ik6HCZGlutamate receptor 2/0.452
2z6iFMN2-nitropropane dioxygenase/0.451
2zruFMNIsopentenyl-diphosphate delta-isomerase/0.449
2gjlFMNNitronate monooxygenase1.13.12.160.447
1o97FADElectron transfer flavoprotein subunit alpha/0.445
1llzFMNFerredoxin-dependent glutamate synthase 21.4.7.10.444
1e2nRCAThymidine kinase/0.443
2xlrFADPutative flavin-containing monooxygenase/0.443
1tehNADAlcohol dehydrogenase class-31.1.1.10.442
2e9v85ASerine/threonine-protein kinase Chk12.7.11.10.442
3pmy41LEndothiapepsin3.4.23.220.441
3sqwANPATP-dependent RNA helicase MSS116, mitochondrial3.6.4.130.441