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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4z1fH71Heat shock protein 75 kDa, mitochondrial

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4z1fH71Heat shock protein 75 kDa, mitochondrial/1.000
1uycPU7Heat shock protein HSP 90-alpha/0.598
2h55DZ8Heat shock protein HSP 90-alpha/0.596
1uy7PU4Heat shock protein HSP 90-alpha/0.587
3o0iP54Heat shock protein HSP 90-alpha/0.584
1uyhPU0Heat shock protein HSP 90-alpha/0.579
2fwyH64Heat shock protein HSP 90-alpha/0.578
1uyePU9Heat shock protein HSP 90-alpha/0.577
1uy8PU5Heat shock protein HSP 90-alpha/0.575
3opdHIEHeat shock protein 83/0.573
3hz5Z64Heat shock protein HSP 90-alpha/0.572
3o6o94MHeat shock protein 83/0.570
2qg2A91Heat shock protein HSP 90-alpha/0.569
2ykeYKEHeat shock protein HSP 90-alpha/0.568
3inwJZBHeat shock protein HSP 90-alpha/0.568
3q5kD1UHeat shock protein 83-1/0.565
1uyiPUZHeat shock protein HSP 90-alpha/0.564
2ykjYKJHeat shock protein HSP 90-alpha/0.564
1uyfPU1Heat shock protein HSP 90-alpha/0.563
2wi72KLHeat shock protein HSP 90-alpha/0.561
1uydPU8Heat shock protein HSP 90-alpha/0.560
2ykiYKIHeat shock protein HSP 90-alpha/0.555
2fwzH71Heat shock protein HSP 90-alpha/0.554
1uy9PU6Heat shock protein HSP 90-alpha/0.553
2ykcYKCHeat shock protein HSP 90-alpha/0.550
1uykPUXHeat shock protein HSP 90-alpha/0.549
1uymPU3Heat shock protein HSP 90-beta/0.547
3d0bSNXHeat shock protein HSP 90-alpha/0.546
2ykbYKBHeat shock protein HSP 90-alpha/0.543
3inxJZCHeat shock protein HSP 90-alpha/0.543
4nh82LCHeat shock protein HSP 90-alpha/0.543
3ft8MOJHeat shock protein HSP 90-alpha/0.541
3mnrSD1Heat shock protein HSP 90-alpha/0.539
3qdd94MHeat shock protein HSP 90-alpha/0.539
1uy6PU3Heat shock protein HSP 90-alpha/0.537
4eftEFTHeat shock protein HSP 90-alpha/0.535
2wi4ZZ4Heat shock protein HSP 90-alpha/0.532
2yee2ECHeat shock protein HSP 90-alpha/0.532
4efuEFUHeat shock protein HSP 90-alpha/0.532
4awq592Heat shock protein HSP 90-alpha/0.517
4bqg50QHeat shock protein HSP 90-alpha/0.515
4nh92LCEndoplasmin/0.515
4awp99AHeat shock protein HSP 90-alpha/0.513
1zw9H64ATP-dependent molecular chaperone HSP82/0.512
2yeiXQIHeat shock protein HSP 90-alpha/0.510
3hz137DHeat shock protein HSP 90-alpha/0.508
4hy6FJ1Heat shock protein HSP 90-alpha/0.507
2yk2YJWHeat shock protein HSP 90-alpha/0.506
2yjxYJXHeat shock protein HSP 90-alpha/0.501
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.500
2xx513NATP-dependent molecular chaperone HSP82/0.499
4awo99BHeat shock protein HSP 90-alpha/0.491
2xhrC0PHeat shock protein HSP 90-alpha/0.490
4bhw01KHistone acetyltransferase p300/0.485
1siqFADGlutaryl-CoA dehydrogenase, mitochondrial1.3.8.60.483
3vhaVHAHeat shock protein HSP 90-alpha/0.481
3dynPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.478
4dbzNDPPutative ketoacyl reductase1.3.10.476
3tk3CPZCytochrome P450 2B41.14.14.10.473
1bsvNDPGDP-L-fucose synthase/0.472
1e3eNAIAlcohol dehydrogenase 41.1.1.10.472
4h6rFDAProline dehydrogenase/0.472
4mv8ACPBiotin carboxylase6.3.4.140.472
1r2jFADFkbI/0.471
2dvlFADAcyl-CoA dehydrogenase/0.469
4bb3KKAIsopenicillin N synthase1.21.3.10.469
1diuBDMDihydrofolate reductase1.5.1.30.468
1qy5NECEndoplasmin/0.467
2ejvNADL-threonine 3-dehydrogenase/0.467
2iviACWIsopenicillin N synthase1.21.3.10.467
4okx198Androgen receptor/0.467
4pzrCOAHistone acetyltransferase p300/0.467
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.466
1qiqACCIsopenicillin N synthase1.21.3.10.466
1xddAAYIntegrin alpha-L/0.466
3ibdCPZCytochrome P450 2B61.14.130.466
3maaFKPAdenylate cyclase type 2/0.466
3maaFKPAdenylate cyclase type 5/0.466
4em9TCEPeroxisome proliferator-activated receptor gamma/0.466
4enhFVXCholesterol 24-hydroxylase/0.466
4hhz15SPoly [ADP-ribose] polymerase 12.4.2.300.466
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.465
3r4oFU3Heat shock protein HSP 90-alpha/0.465
1fmlRTLRetinol dehydratase/0.464
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.464
3r4nFU5Heat shock protein HSP 90-alpha/0.464
4i6gFADCryptochrome-2/0.464
1z6tADPApoptotic protease-activating factor 1/0.463
3g5sFADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO/0.463
3jzfJZKBiotin carboxylase6.3.4.140.463
3th8TH9Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.463
2i4jDRJPeroxisome proliferator-activated receptor gamma/0.462
3b28B2XHeat shock protein HSP 90-alpha/0.462
3v49PK0Androgen receptor/0.462
4gxs0YSGlutamate receptor 2/0.462
1h50FMNPentaerythritol tetranitrate reductase/0.461
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.461
1kzjCB3Thymidylate synthase/0.461
2w6oOA3Biotin carboxylase6.3.4.140.461
4mv1ADPBiotin carboxylase6.3.4.140.461
4oxyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.461
4r21STRCytochrome P450 family 17 polypeptide 2/0.461
2xlsFADPutative flavin-containing monooxygenase/0.460
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.460
1bgqRDCATP-dependent molecular chaperone HSP82/0.459
1cjkFOKAdenylate cyclase type 2/0.459
1cjkFOKAdenylate cyclase type 5/0.459
2c59NADGDP-mannose 3,5-epimerase5.1.3.180.459
2e1tMLCAnthocyanin malonyltransferase homolog/0.459
2xabVHDHeat shock protein HSP 90-alpha/0.459
4e4qRRHPeroxisome proliferator-activated receptor gamma/0.459
4l3q926Glucokinase2.7.1.20.459
1ppjANYCytochrome b/0.458
2a1tFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.458
3gfbNADL-threonine 3-dehydrogenase/0.458
3p6oETGCamphor 5-monooxygenase1.14.15.10.458
3v4aPK1Androgen receptor/0.458
1bk0ACVIsopenicillin N synthase1.21.3.10.457
1qjfACSIsopenicillin N synthase1.21.3.10.457
2wi6ZZ6Heat shock protein HSP 90-alpha/0.457
3d84NDPDihydrofolate reductase1.5.1.30.457
3gu83GUDeath-associated protein kinase 12.7.11.10.457
3p6pA6BCamphor 5-monooxygenase1.14.15.10.457
4a8v2ANMajor pollen allergen Bet v 1-J/0.457
4b7sQLECytochrome P450 monooxygenase PikC/0.457
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.457
1m13HYFNuclear receptor subfamily 1 group I member 2/0.456
3jziJZLBiotin carboxylase6.3.4.140.456
1cjtFOKAdenylate cyclase type 2/0.455
1cjtFOKAdenylate cyclase type 5/0.455
1fmjRTLRetinol dehydratase/0.455
3dgaNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.455
3r4pFU7Heat shock protein HSP 90-alpha/0.455
4iui1GQEstrogen receptor/0.455
4jazSTLPeroxisome proliferator-activated receptor gamma/0.455
4pkl1GHUncharacterized protein/0.455
1eioGCHGastrotropin/0.454
1qy8RDIEndoplasmin/0.454
2cibCM6Lanosterol 14-alpha demethylase1.14.13.700.454
2iwuNP5ATP-dependent molecular chaperone HSP82/0.454
3hhu819Heat shock protein HSP 90-alpha/0.454
3iqzH4MF420-dependent methylenetetrahydromethanopterin dehydrogenase1.5.98.10.454
3sp9IL2Peroxisome proliferator-activated receptor delta/0.454
4cdmFO1Deoxyribodipyrimidine photolyase/0.454
4l4xNDPAmphI/0.454
4uyf73BBromodomain-containing protein 2/0.454
4y8wSTRSteroid 21-hydroxylase/0.454
1hb3SCVIsopenicillin N synthase1.21.3.10.453
1u0zRDCEndoplasmin/0.453
1uzwCDHIsopenicillin N synthase1.21.3.10.453
2d1cNAPIsocitrate dehydrogenase [NADP]1.1.1.420.453
2zbaZBATrichothecene 3-O-acetyltransferase/0.453
3h3sH15Collagen type IV alpha-3-binding protein/0.453
3is9AC7Gag-Pol polyprotein2.7.7.490.453
3p3zP3ZPutative cytochrome P450/0.453
3pehIBDEndoplasmin homolog, putative/0.453
3t2sAGSHeat shock protein HSP 90-alpha/0.453
4ryvZEAProtein LlR18A/0.453
1kqwRTLCellular retinol-binding protein type II/0.452
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.452
1rj6AZMCarbonic anhydrase 144.2.1.10.452
3iaeD7KBenzaldehyde lyase/0.452
4ktoFADPutative isovaleryl-CoA dehydrogenase protein/0.452
1obnASVIsopenicillin N synthase1.21.3.10.451
2y6fM9FIsopenicillin N synthase1.21.3.10.451
4cukNAID-lactate dehydrogenase/0.451
4ead0NPThymidine phosphorylase2.4.2.40.451
1dhiMTXDihydrofolate reductase1.5.1.30.450
1fxsNAPGDP-L-fucose synthase/0.450
1oc1ASVIsopenicillin N synthase1.21.3.10.450
1zeoC01Peroxisome proliferator-activated receptor gamma/0.450
2brbPFQSerine/threonine-protein kinase Chk12.7.11.10.450
2hdjNDPAldo-keto reductase family 1 member C2/0.450
3inmNDPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.450
4jqlVJ6Heat shock protein HSP 90-alpha/0.450
5a3cNADSIR2 family protein/0.450
3pwhZMAAdenosine receptor A2a/0.450
1ia4TQ6Dihydrofolate reductase1.5.1.30.449
1zmdNAIDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.449
3eigMTXDihydrofolate reductase1.5.1.30.449
5a9sNAPPutative dehydrogenase/0.449
1g4tFTPThiamine-phosphate synthase/0.448
1nhhANPDNA mismatch repair protein MutL/0.448
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.448
2tscCB3Thymidylate synthase/0.448
2xd6XD6ATP-dependent molecular chaperone HSP82/0.448
2yk2YJXHeat shock protein HSP 90-alpha/0.448
4h3i10VBeta-secretase 13.4.23.460.448
4j4vSVRNucleocapsid protein/0.448
4lxjLANLanosterol 14-alpha demethylase1.14.13.700.448
4wdb2AM2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.448
5d7q4I5NAD-dependent protein deacetylase sirtuin-23.5.10.448
1pdhFASp-hydroxybenzoate hydroxylase/0.447
1u0yPA7Endoplasmin/0.447
1zg32HIIsoflavone 4'-O-methyltransferase/0.447
2broDF2Serine/threonine-protein kinase Chk12.7.11.10.447
2cig1DGDihydrofolate reductase1.5.1.30.447
2fzhDH1Dihydrofolate reductase1.5.1.30.447
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.447
2y60M8FIsopenicillin N synthase1.21.3.10.447
3gobHXXDdmC/0.447
4nmbFADBifunctional protein PutA/0.447
5b1yNDP3-oxoacyl-[acyl-carrier-protein] reductase/0.447
1w2xRCPAcetyl-CoA carboxylase/0.446
2p4yC03Peroxisome proliferator-activated receptor gamma/0.446
2vf0F89Thymidylate synthase/0.446
3oafOAGDihydrofolate reductase1.5.1.30.446
4a99FADTetX family tetracycline inactivation enzyme/0.446
4dphP65Bifunctional dihydrofolate reductase-thymidylate synthase/0.446
4fex0TOAminoglycoside 3'-phosphotransferase AphA1-IAB/0.446
4irnFADAnaB/0.446
4yaw2AMNADPH--cytochrome P450 reductase/0.446
5eccNAPDehydrofolate reductase type I/0.446
2bu8ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.445
2vbdV10Isopenicillin N synthase1.21.3.10.445
2vcmM11Isopenicillin N synthase1.21.3.10.445
2yejZZ3Heat shock protein HSP 90-alpha/0.445
3h6k33TCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.445
3hk1B64Fatty acid-binding protein, adipocyte/0.445
4j03FVSBifunctional epoxide hydrolase 23.1.3.760.445
4oznATPAmmonium transporter/0.445
4xwrFADCholesterol oxidase1.1.3.60.445
1e7aPFLSerum albumin/0.444
2ardFDAFlavin-dependent tryptophan halogenase PrnA1.14.19.90.444
2hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.444
2i4pDRHPeroxisome proliferator-activated receptor gamma/0.444
2xvv9DNSerum albumin/0.444
3adaNADSubunit alpha of sarocosine oxidase/0.444
3copADPGlycogen synthase2.4.1.210.444
3k981RCHeat shock protein HSP 90-alpha/0.444
3v2uATPProtein GAL3/0.444
3vrtYS2Vitamin D3 receptor/0.444
4ku5DCC3-oxoacyl-[ACP] synthase III/0.444
4n5nNAPAcetoacetyl-CoA reductase1.1.1.360.444
4o0rX4ZSerine/threonine-protein kinase PAK 12.7.11.10.444
4u97STUInterleukin-1 receptor-associated kinase 42.7.11.10.444
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.443
1ijhFADCholesterol oxidase1.1.3.60.443
1tdrMTXDihydrofolate reductase1.5.1.30.443
2zjwREFCasein kinase II subunit alpha2.7.11.10.443
3hekBD0Heat shock protein HSP 90-alpha/0.443
3jqpA2PFerredoxin--NADP reductase, apicoplast/0.443
3mdvCL6Cholesterol 24-hydroxylase/0.443
3ukoNADAlcohol dehydrogenase class-3/0.443
4ambDUDPutative glycosyl transferase/0.443
4bcrWY1Peroxisome proliferator-activated receptor alpha/0.443
5e8wSTUTGF-beta receptor type-12.7.11.300.443
1flmFMNFMN-binding protein/0.442
1ia3TQ5Dihydrofolate reductase1.5.1.30.442
1k7l544Peroxisome proliferator-activated receptor alpha/0.442
1p0hACOMycothiol acetyltransferase2.3.1.1890.442
1pd9CO4Dihydrofolate reductase1.5.1.30.442
1wn3HXCPhenylacetic acid degradation protein PaaI/0.442
2bu9HFVIsopenicillin N synthase1.21.3.10.442
2jdsL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.442
2zb45OPProstaglandin reductase 21.3.1.480.442
3kb6NADD-lactate dehydrogenase/0.442
3p62FMNPentaerythritol tetranitrate reductase/0.442
3slkNDPPolyketide synthase extender module 2/0.442
4emdC5P4-diphosphocytidyl-2-C-methyl-D-erythritol kinase/0.442
4g73NAIRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.442
4h380YXDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.442
4i5i4I5NAD-dependent protein deacetylase sirtuin-13.5.10.442
4ok1198Androgen receptor/0.442
4uymVOR14-alpha sterol demethylase Cyp51B/0.442
1lsjNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.441
1tehNADAlcohol dehydrogenase class-31.1.1.10.441
2c12FADNitroalkane oxidase1.7.3.10.441
2dhfDZFDihydrofolate reductase1.5.1.30.441
2gcgNDPGlyoxylate reductase/hydroxypyruvate reductase1.1.1.790.441
2gqpPA7Endoplasmin/0.441
2o1xTDP1-deoxy-D-xylulose-5-phosphate synthase2.2.1.70.441
2yejXQKHeat shock protein HSP 90-alpha/0.441
3dheANDEstradiol 17-beta-dehydrogenase 11.1.1.620.441
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.441
3mpjFADGlutaryl-CoA dehydrogenase1.3.99.320.441
3mtfA3FActivin receptor type-12.7.11.300.441
3ozd4CTS-methyl-5'-thioadenosine phosphorylase/0.441
3rlr3RRHeat shock protein HSP 90-alpha/0.441
3vrwYS5Vitamin D3 receptor/0.441
3vt8YI3Vitamin D3 receptor/0.441
3zuyTCHTransporter/0.441
4btmF8ETau-tubulin kinase 12.7.11.10.441
4ele31IDihydrofolate reductase/0.441
4g2rH1LProbable propionyl-CoA carboxylase beta chain 66.4.1.30.441
4ge40KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.441
4gk2L66Ephrin type-A receptor 32.7.10.10.441
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.441
4o1mNADEnoyl-acyl carrier reductase/0.441
4wa9AXITyrosine-protein kinase ABL12.7.10.20.441
5iqiGNPBifunctional AAC/APH2.3.10.441
1m78NDPDihydrofolate reductase1.5.1.30.440
1rx8FOLDihydrofolate reductase1.5.1.30.440
1yszNECEndoplasmin/0.440
2ejzSAHDiphthine synthase/0.440
2pwlACPFibroblast growth factor receptor 2/0.440
2qo9ANPEphrin type-A receptor 32.7.10.10.440
3a0iAJIGlucokinase2.7.1.20.440
3a6rFMNFMN-binding protein/0.440
3nr4PYVAbscisic acid receptor PYL2/0.440
3oqkS52Renin3.4.23.150.440
3s7a684Dihydrofolate reductase1.5.1.30.440
3vtbTKAVitamin D3 receptor/0.440
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.440
4elf35IDihydrofolate reductase/0.440
4feu537Aminoglycoside 3'-phosphotransferase AphA1-IAB/0.440