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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4yvkSFGtRNA (guanine-N(1)-)-methyltransferase2.1.1.228

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4yvkSFGtRNA (guanine-N(1)-)-methyltransferase2.1.1.2281.000
4yvjSFGtRNA (guanine-N(1)-)-methyltransferase2.1.1.2280.625
4h3zSAHtRNA (guanine-N(1)-)-methyltransferase/0.488
1uamSAHtRNA (guanine-N(1)-)-methyltransferase2.1.1.2280.482
1ualSAHtRNA (guanine-N(1)-)-methyltransferase2.1.1.2280.462
3isjA8DPantothenate synthetase6.3.2.10.452
4dc0NDPPutative ketoacyl reductase1.3.10.450
3tneRITCandidapepsin-13.4.23.240.447
4mcd22LtRNA (guanine-N(1)-)-methyltransferase2.1.1.2280.445
3iocA5DPantothenate synthetase6.3.2.10.444
4ig6SAHtRNA (guanine-N(1)-)-methyltransferase/0.444
1u3dFADCryptochrome-1/0.443
2i4zDRHPeroxisome proliferator-activated receptor gamma/0.440