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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4yshFADGlycine oxidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4yshFADGlycine oxidase/1.000
3vqrFADPutative oxidoreductase/0.518
3axbFADPutative oxidoreductase/0.503
1ryiFADGlycine oxidase1.4.3.190.499
3ad9FADSubunit beta of sarcosine oxidase/0.485
2du8FADD-amino-acid oxidase1.4.3.30.479
2e48FADD-amino-acid oxidase1.4.3.30.472
1ng3FADGlycine oxidase1.4.3.190.470
2rgoFADAlpha-Glycerophosphate Oxidase/0.467
3if9FADGlycine oxidase1.4.3.190.464
1y56FAD382aa long hypothetical sarcosine oxidase/0.463
3sglFADtRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC/0.459
1ng4FADGlycine oxidase1.4.3.190.456
5hxwFADL-amino acid deaminase/0.445
1kifFADD-amino-acid oxidase1.4.3.30.444