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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4yaf2AMNADPH--cytochrome P450 reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4yaf2AMNADPH--cytochrome P450 reductase/1.000
4y7cNAPNADPH--cytochrome P450 reductase/0.643
4y9rNAPNADPH--cytochrome P450 reductase/0.643
4yau2AMNADPH--cytochrome P450 reductase/0.622
4yaw2AMNADPH--cytochrome P450 reductase/0.622
1amoNAPNADPH--cytochrome P450 reductase/0.612
3qfcNAPNADPH--cytochrome P450 reductase/0.611
3qftNAPNADPH--cytochrome P450 reductase/0.607
4y9uNAPNADPH--cytochrome P450 reductase/0.602
4yal2AMNADPH--cytochrome P450 reductase/0.593
3qfrNAPNADPH--cytochrome P450 reductase/0.584
3qe2NAPNADPH--cytochrome P450 reductase/0.576
3qfsNAPNADPH--cytochrome P450 reductase/0.575
1ja1NAPNADPH--cytochrome P450 reductase/0.561
2bf4NAPNADPH--cytochrome P450 reductase/0.555
2bn4NAPNADPH--cytochrome P450 reductase/0.535
2bpoNAPNADPH--cytochrome P450 reductase/0.528
3ojxNAPNADPH--cytochrome P450 reductase/0.519
4yao2AMNADPH--cytochrome P450 reductase/0.508
1w87NAPFerredoxin--NADP reductase1.18.1.20.486
3jqpA2PFerredoxin--NADP reductase, apicoplast/0.460
2rc6NAPFerredoxin--NADP reductase/0.451
2ok7A2PFerredoxin--NADP reductase, apicoplast/0.443