sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4y0v | GDP | ADP-ribosylation factor 1, putative |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 1.000 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.968 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.469 | |
| 3hyo | ADP | Pyridoxal kinase | / | 0.449 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.449 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.447 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.445 | |
| 4e03 | ADP | Plasmid partitioning protein ParF | / | 0.445 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.442 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.440 |