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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4xxgFADCholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4xxgFADCholesterol oxidase1.1.3.61.000
4xwrFADCholesterol oxidase1.1.3.60.923
1n4uFAECholesterol oxidase1.1.3.60.901
1mxtFAECholesterol oxidase1.1.3.60.900
1b8sFADCholesterol oxidase1.1.3.60.838
1ijhFADCholesterol oxidase1.1.3.60.834
3gyjFADCholesterol oxidase1.1.3.60.834
3gyiFADCholesterol oxidase1.1.3.60.832
4u2lSFDCholesterol oxidase1.1.3.60.824
4rekFADCholesterol oxidase1.1.3.60.818
1n4vFADCholesterol oxidase1.1.3.60.762
1b4vFADCholesterol oxidase1.1.3.60.744
1cboFADCholesterol oxidase1.1.3.60.705
3b6dFAECholesterol oxidase1.1.3.60.668
1cc2FADCholesterol oxidase1.1.3.60.654
3cnjFADCholesterol oxidase1.1.3.60.649
4u2sFDACholesterol oxidase1.1.3.60.644
1n4wFADCholesterol oxidase1.1.3.60.639
1n1pFADCholesterol oxidase1.1.3.60.635
3coxFADCholesterol oxidase1.1.3.60.568
4qi5FADCellobiose dehydrogenase/0.529
4qi7FADCellobiose dehydrogenase/0.528
4u2tFADCholesterol oxidase1.1.3.60.515
4qi4FADCellobiose dehydrogenase/0.514
2gewFADCholesterol oxidase1.1.3.60.499
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.481
5hsaFASAlcohol oxidase 11.1.3.130.467
4udqFAD5-(hydroxymethyl)furfural oxidase/0.443
1galFADGlucose oxidase1.1.3.40.440
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.440