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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4xwrFADCholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4xwrFADCholesterol oxidase1.1.3.61.000
4xxgFADCholesterol oxidase1.1.3.60.930
1mxtFAECholesterol oxidase1.1.3.60.921
1n4uFAECholesterol oxidase1.1.3.60.876
1ijhFADCholesterol oxidase1.1.3.60.855
4u2lSFDCholesterol oxidase1.1.3.60.842
3gyjFADCholesterol oxidase1.1.3.60.821
3gyiFADCholesterol oxidase1.1.3.60.813
1b8sFADCholesterol oxidase1.1.3.60.797
1n4vFADCholesterol oxidase1.1.3.60.794
4rekFADCholesterol oxidase1.1.3.60.781
1b4vFADCholesterol oxidase1.1.3.60.778
1cboFADCholesterol oxidase1.1.3.60.739
1cc2FADCholesterol oxidase1.1.3.60.689
4u2sFDACholesterol oxidase1.1.3.60.683
3b6dFAECholesterol oxidase1.1.3.60.678
3cnjFADCholesterol oxidase1.1.3.60.645
1n1pFADCholesterol oxidase1.1.3.60.615
1n4wFADCholesterol oxidase1.1.3.60.613
3coxFADCholesterol oxidase1.1.3.60.567
4u2tFADCholesterol oxidase1.1.3.60.565
4qi7FADCellobiose dehydrogenase/0.526
4qi5FADCellobiose dehydrogenase/0.525
2gewFADCholesterol oxidase1.1.3.60.509
4qi4FADCellobiose dehydrogenase/0.508
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.496
5hsaFASAlcohol oxidase 11.1.3.130.474
4udqFAD5-(hydroxymethyl)furfural oxidase/0.459
1galFADGlucose oxidase1.1.3.40.448
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.445
4mihFADPyranose 2-oxidase1.1.3.100.441
4udrFAD5-(hydroxymethyl)furfural oxidase/0.440