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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4x7wMVIMycinamicin III 3''-O-methyltransferase2.1.1.237

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4x7wMVIMycinamicin III 3''-O-methyltransferase2.1.1.2371.000
4x81MVIMycinamicin III 3''-O-methyltransferase2.1.1.2370.646
4x7vMIVMycinamicin III 3''-O-methyltransferase2.1.1.2370.632
4x7zZM3Mycinamicin III 3''-O-methyltransferase2.1.1.2370.596
4x7uZM3Mycinamicin III 3''-O-methyltransferase2.1.1.2370.581
4a862ANMajor pollen allergen Bet v 1-A/0.460
4uymVOR14-alpha sterol demethylase Cyp51B/0.451
3a1cACPProbable copper-exporting P-type ATPase A3.6.3.540.450
3oadLPORenin3.4.23.150.448
4a802ANMajor pollen allergen Bet v 1-A/0.448
4djhJDCKappa-type opioid receptor/0.443