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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4udrFAD5-(hydroxymethyl)furfural oxidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4udrFAD5-(hydroxymethyl)furfural oxidase/1.000
4udqFAD5-(hydroxymethyl)furfural oxidase/0.710
5hsaFASAlcohol oxidase 11.1.3.130.534
4qi4FADCellobiose dehydrogenase/0.517
4qi5FADCellobiose dehydrogenase/0.499
4qi7FADCellobiose dehydrogenase/0.498
4mihFADPyranose 2-oxidase1.1.3.100.489
1cboFADCholesterol oxidase1.1.3.60.484
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.481
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.481
1n4uFAECholesterol oxidase1.1.3.60.480
3coxFADCholesterol oxidase1.1.3.60.480
1cc2FADCholesterol oxidase1.1.3.60.479
4z26FADPutative GMC-type oxidoreductase R13510.478
1mxtFAECholesterol oxidase1.1.3.60.477
4u2lSFDCholesterol oxidase1.1.3.60.477
3bg7FADPyranose 2-oxidase/0.472
1galFADGlucose oxidase1.1.3.40.471
3gyjFADCholesterol oxidase1.1.3.60.471
3cnjFADCholesterol oxidase1.1.3.60.469
4rekFADCholesterol oxidase1.1.3.60.467
4yntFDAGlucose oxidase, putative/0.467
2igoFADPyranose 2-oxidase/0.466
1b8sFADCholesterol oxidase1.1.3.60.465
1cf3FADGlucose oxidase1.1.3.40.465
4u2sFDACholesterol oxidase1.1.3.60.464
2ignFADPyranose 2-oxidase/0.463
3gyiFADCholesterol oxidase1.1.3.60.462
3k4nFADPyranose 2-oxidase/0.457
4xwrFADCholesterol oxidase1.1.3.60.457
4xxgFADCholesterol oxidase1.1.3.60.455
3q9tFAYUncharacterized protein/0.454
1b4vFADCholesterol oxidase1.1.3.60.445
3vqrFADPutative oxidoreductase/0.444