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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4uajFADNa(+)-translocating NADH-quinone reductase subunit F

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/1.000
2r6hFADNa(+)-translocating NADH-quinone reductase subunit F/0.609
3fpkFADFerredoxin-NADP reductase/0.538
3ojxFADNADPH--cytochrome P450 reductase/0.527
1gvhFADFlavohemoprotein/0.522
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.499
2piaFMNPhthalate dioxygenase reductase/0.488
1f20FADNitric oxide synthase, brain1.14.13.390.472
1tllFADNitric oxide synthase, brain1.14.13.390.469
3qfcFADNADPH--cytochrome P450 reductase/0.468
1gawFADFerredoxin/0.466
1amoFADNADPH--cytochrome P450 reductase/0.465
3vo2FADFerredoxin--NADP reductase/0.460
1ja1FADNADPH--cytochrome P450 reductase/0.452
1fdrFADFerredoxin--NADP reductase1.18.1.20.445
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.445
3qe2FADNADPH--cytochrome P450 reductase/0.445
3w5uFADFerredoxin/0.441
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.440
4yaoFADNADPH--cytochrome P450 reductase/0.440