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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4u2sFDACholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4u2sFDACholesterol oxidase1.1.3.61.000
1cc2FADCholesterol oxidase1.1.3.60.799
1mxtFAECholesterol oxidase1.1.3.60.722
1n4uFAECholesterol oxidase1.1.3.60.703
4u2lSFDCholesterol oxidase1.1.3.60.678
1b4vFADCholesterol oxidase1.1.3.60.669
1ijhFADCholesterol oxidase1.1.3.60.635
1n4vFADCholesterol oxidase1.1.3.60.633
4xwrFADCholesterol oxidase1.1.3.60.612
1cboFADCholesterol oxidase1.1.3.60.599
3cnjFADCholesterol oxidase1.1.3.60.593
3gyjFADCholesterol oxidase1.1.3.60.580
4xxgFADCholesterol oxidase1.1.3.60.580
4rekFADCholesterol oxidase1.1.3.60.576
3coxFADCholesterol oxidase1.1.3.60.567
3gyiFADCholesterol oxidase1.1.3.60.546
1b8sFADCholesterol oxidase1.1.3.60.531
4qi5FADCellobiose dehydrogenase/0.522
4qi7FADCellobiose dehydrogenase/0.512
4qi4FADCellobiose dehydrogenase/0.510
5hsaFASAlcohol oxidase 11.1.3.130.460
1galFADGlucose oxidase1.1.3.40.458
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.441