Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4u2lSFDCholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4u2lSFDCholesterol oxidase1.1.3.61.000
1mxtFAECholesterol oxidase1.1.3.60.749
1n4uFAECholesterol oxidase1.1.3.60.723
4xwrFADCholesterol oxidase1.1.3.60.708
4xxgFADCholesterol oxidase1.1.3.60.699
1cboFADCholesterol oxidase1.1.3.60.694
1b8sFADCholesterol oxidase1.1.3.60.691
1ijhFADCholesterol oxidase1.1.3.60.679
1n4vFADCholesterol oxidase1.1.3.60.672
1cc2FADCholesterol oxidase1.1.3.60.667
1b4vFADCholesterol oxidase1.1.3.60.649
3gyjFADCholesterol oxidase1.1.3.60.640
3gyiFADCholesterol oxidase1.1.3.60.634
4u2sFDACholesterol oxidase1.1.3.60.634
4rekFADCholesterol oxidase1.1.3.60.632
3coxFADCholesterol oxidase1.1.3.60.537
3cnjFADCholesterol oxidase1.1.3.60.529
4qi7FADCellobiose dehydrogenase/0.514
4qi5FADCellobiose dehydrogenase/0.503
4qi4FADCellobiose dehydrogenase/0.498
4udqFAD5-(hydroxymethyl)furfural oxidase/0.442