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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4ttcFMNIodotyrosine deiodinase 1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4ttcFMNIodotyrosine deiodinase 1/1.000
3gh8FMNIodotyrosine deiodinase 11.21.1.10.569
3gfdFMNIodotyrosine deiodinase 11.21.1.10.568
3to0FMNIodotyrosine deiodinase 11.21.1.10.560
4ttbFMNIodotyrosine deiodinase 1/0.542
3hj9FMNUncharacterized protein/0.501
3qe2FMNNADPH--cytochrome P450 reductase/0.488
2ojtUBAGlutamate receptor ionotropic, kainate 1/0.484
1lbcCYZGlutamate receptor 2/0.483
1ds7FMNOxygen-insensitive NAD(P)H nitroreductase/0.482
3x22FMNOxygen-insensitive NAD(P)H nitroreductase/0.482
2g1r3IGRenin3.4.23.150.481
5irnADPNucleotide binding oligomerization domain containing 2/0.481
1ipeNDPTropinone reductase 21.1.1.2360.479
1szgFNSCytochrome b2, mitochondrial1.1.2.30.475
4bfxZVXPantothenate kinase2.7.1.330.475
3a3gDLZLumazine protein/0.474
3mpjFADGlutaryl-CoA dehydrogenase1.3.99.320.474
2geuCOKPantothenate kinase2.7.1.330.473
2c12FADNitroalkane oxidase1.7.3.10.472
2v7qATPATP synthase subunit alpha, mitochondrial/0.472
2v7qATPATP synthase subunit beta, mitochondrial3.6.3.140.472
3s55NADPutative short-chain dehydrogenase/reductase/0.471
4y9lFADAcyl-CoA dehydrogenase family member 11/0.471
1n7hNDPGDP-mannose 4,6 dehydratase 24.2.1.470.470
2jb4A14Isopenicillin N synthase1.21.3.10.469
2qs3UBEGlutamate receptor ionotropic, kainate 1/0.469
3lpiZ74Beta-secretase 13.4.23.460.469
4jnkNAIL-lactate dehydrogenase A chain1.1.1.270.469
1bwfATFGlycerol kinase/0.468
2o7oDXTTetracycline repressor protein class D/0.468
4q71FADBifunctional protein PutA/0.468
4dfg0JVGag-Pol polyprotein3.4.23.160.466
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.465
2qo9ANPEphrin type-A receptor 32.7.10.10.465
4gz612VUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit/0.465
1ykiFMNOxygen-insensitive NAD(P)H nitroreductase/0.464
2y05NAPProstaglandin reductase 1/0.464
4b3aTACTetracycline repressor protein class D/0.464
1g0nNDPTetrahydroxynaphthalene reductase1.1.1.2520.463
2rcyNAPPyrroline-5-carboxylate reductase/0.463
3qwbNDPProbable quinone oxidoreductase1.6.5.50.463
3te5NAI5'-AMP-activated protein kinase subunit gamma/0.463
4xnw2IDP2Y purinoceptor 1/0.463
1yluFMNOxygen-insensitive NAD(P)H nitroreductase/0.462
4yxm2BADNA integrity scanning protein DisA/0.462
2xx91NFGlutamate receptor 2/0.461
3ijoB4DGlutamate receptor 2/0.461
1e1qANPATP synthase subunit alpha, mitochondrial/0.460
1e1qANPATP synthase subunit beta, mitochondrial3.6.3.140.460
1k4qFADGlutathione reductase, mitochondrial1.8.1.70.460
1u8vFAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase/0.460
3sx2NADUncharacterized protein/0.460
1g6oADPCag alpha/0.459
2iko7IGRenin3.4.23.150.459
3flkNAITartrate dehydrogenase/decarboxylase1.1.1.930.459
3ig6438Urokinase-type plasminogen activator3.4.21.730.459
5b1yNDP3-oxoacyl-[acyl-carrier-protein] reductase/0.459
1siqFADGlutaryl-CoA dehydrogenase, mitochondrial1.3.8.60.458
1udaUFGUDP-glucose 4-epimerase5.1.3.20.458
3vg10GTBeta-secretase 13.4.23.460.458
4dc0NDPPutative ketoacyl reductase1.3.10.458
2b7aIZATyrosine-protein kinase JAK2/0.457
1kqdFMNOxygen-insensitive NAD(P)H nitroreductase/0.456
2b8v3BNBeta-secretase 13.4.23.460.456
2fw3BUICarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.456
3pwm017Gag-Pol polyprotein3.4.23.160.456
4pl0ANPMicrocin-J25 export ATP-binding/permease protein McjD/0.456
4z61ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.456
5fl3ADPPili retraction protein PilT/0.456
1hb3SCVIsopenicillin N synthase1.21.3.10.455
4dd8BATDisintegrin and metalloproteinase domain-containing protein 83.4.240.455
2ebaFADPutative glutaryl-CoA dehydrogenase/0.454
2qjoNADBifunctional NMN adenylyltransferase/Nudix hydrolase2.7.7.10.454
2xrlDXTTetracycline repressor protein class D/0.454
3bmoNAPPteridine reductase/0.454
3r7kFDAProbable acyl CoA dehydrogenase/0.454
4qlyFMNEnone reductase CLA-ER/0.454
1febFADTrypanothione reductase1.8.1.120.453
1kp3ATPArgininosuccinate synthase6.3.4.50.453
1p0hACOMycothiol acetyltransferase2.3.1.1890.453
3f1kNAPUncharacterized oxidoreductase YciK10.453
3gwdNAPCyclohexanone monooxygenase/0.453
4kgkGTPUncharacterized protein/0.453
5dldUD1UDP-N-Acetylglucosamine 2-epimerase/0.453
1t2aNDPGDP-mannose 4,6 dehydratase4.2.1.470.452
2vkeTACTetracycline repressor protein class D/0.452
3p3c3P3UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.452
4eakATP5'-AMP-activated protein kinase subunit gamma-1/0.452
1n2sNAIdTDP-4-dehydrorhamnose reductase1.1.1.1330.451
1orkATCTetracycline repressor protein class D/0.451
1udyFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.451
1x1cSAHC-20 methyltransferase/0.451
1xkvATPPhosphoenolpyruvate carboxykinase (ATP)/0.451
2gmhFADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial1.5.5.10.451
3tjzGNPADP-ribosylation factor 1/0.451
3umsGDPGuanine nucleotide-binding protein G(i) subunit alpha-1/0.451
4bfvZVVPantothenate kinase2.7.1.330.451
1icvFMNOxygen-insensitive NAD(P)H nitroreductase/0.450
1r4lXX5Angiotensin-converting enzyme 23.4.17.230.450
1w19T5P6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.450
1xdpATPPolyphosphate kinase/0.450
2g1s4IGRenin3.4.23.150.450
3fstFAD5,10-methylenetetrahydrofolate reductase1.5.1.200.450
3lzs017Gag-Pol polyprotein3.4.23.160.450
3ms421NGlycogen phosphorylase, muscle form2.4.1.10.450
3uovFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.450
4a83DXCMajor pollen allergen Bet v 1-A/0.450
4ambDUDPutative glycosyl transferase/0.450
4xxvNAD3-isopropylmalate dehydrogenase/0.450
5fkmTDCTetracycline repressor protein class D/0.450
1gsnFADGlutathione reductase, mitochondrial1.8.1.70.449
1kqcFMNOxygen-insensitive NAD(P)H nitroreductase/0.449
2po3T4K4-dehydrase/0.449
3he3FADUDP-galactopyranose mutase/0.449
3i25MV7Beta-secretase 13.4.23.460.449
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.449
1c9k5GPBifunctional adenosylcobalamin biosynthesis protein CobU/0.448
1g63FMNEpidermin decarboxylase4.1.10.448
2q1sNAIPutative nucleotide sugar epimerase/ dehydratase/0.448
3e39FMNNitroreductase/0.448
3eo8FMNPutative nitroreductase/0.448
1jqiFADShort-chain specific acyl-CoA dehydrogenase, mitochondrial/0.447
1vl8NAPOxidoreductase, short chain dehydrogenase/reductase family/0.447
2g247IGRenin3.4.23.150.447
2i4qUA4Renin3.4.23.150.447
2oapANPType II secretion system protein (GspE-2)/0.447
2vbdV10Isopenicillin N synthase1.21.3.10.447
3toh079Gag-Pol polyprotein2.7.7.490.447
3ukfGDUUDP-galactopyranose mutase/0.447
3up4FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.447
4hmwFMNPyridoxamine 5'-phosphate oxidase/0.447
4lnbED5CaaX farnesyltransferase beta subunit Ram1/0.447
4u0mATPCyclic GMP-AMP synthase/0.447
2c29NAPDihydroflavonol 4-reductase/0.446
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.446
2fxv5GPXanthine phosphoribosyltransferase2.4.2.220.446
2g25TDKPyruvate dehydrogenase E1 component1.2.4.10.446
2x92X92Angiotensin-converting enzyme3.4.15.10.446
2xveFADPutative flavin-containing monooxygenase/0.446
2zvbSAHPrecorrin-3 C17-methyltransferase/0.446
3bk2U5PRibonuclease J/0.446
3koqFMNPutative nitroreductase/0.446
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.446
4bftZVTPantothenate kinase2.7.1.330.446
4bzbDGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.446
4dbzNDPPutative ketoacyl reductase1.3.10.446
4m5pFMNNADPH dehydrogenase/0.446
1i0sFMNFerric-chelate reductase (NAD(P)H)/0.445
1kqbFMNOxygen-insensitive NAD(P)H nitroreductase/0.445
1yb5NAPQuinone oxidoreductase1.6.5.50.445
1z6tADPApoptotic protease-activating factor 1/0.445
2nrySTUInterleukin-1 receptor-associated kinase 42.7.11.10.445
2r8oT5XTransketolase 1/0.445
2zb3NDPProstaglandin reductase 21.3.1.480.445
3hyoADPPyridoxal kinase/0.445
3mddFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.445
3o03NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase)/0.445
3udn09BBeta-secretase 13.4.23.460.445
4bfzZVZPantothenate kinase2.7.1.330.445
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.445
4ewo996Beta-secretase 13.4.23.460.445
4hmz18TdTDP-4-dehydro-6-deoxyglucose 3-epimerase5.1.3.270.445
4la1FADThioredoxin glutathione reductase/0.445
4twrNADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase/0.445
5dp2NAPCurF/0.445
5jscFADPutative acyl-CoA dehydrogenase/0.445
1gzuNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.444
1icuFMNOxygen-insensitive NAD(P)H nitroreductase/0.444
1oo5FMNOxygen-insensitive NAD(P)H nitroreductase/0.444
1oonFMNOxygen-insensitive NAD(P)H nitroreductase/0.444
2iviACWIsopenicillin N synthase1.21.3.10.444
3phiNDPShikimate dehydrogenase (NADP(+))/0.444
3qdlFMNOxygen-insensitive NADPH nitroreductase/0.444
4f7iNAD3-isopropylmalate dehydrogenase1.1.1.850.444
4frkDWDBeta-secretase 13.4.23.460.444
4g3jVNTLanosterol 14-alpha-demethylase/0.444
4g7gVFVLanosterol 14-alpha-demethylase/0.444
4rvgTYDD-mycarose 3-C-methyltransferase/0.444
1bsvNDPGDP-L-fucose synthase/0.443
1knrFADL-aspartate oxidase1.4.3.160.443
1kqoDNDNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.443
2f17PYIThiamin pyrophosphokinase 12.7.6.20.443
2gdzNAD15-hydroxyprostaglandin dehydrogenase [NAD(+)]1.1.1.1410.443
3b6zCO7Enoyl reductase LovC10.443
3r4b74TGag-Pol polyprotein/0.443
3tw3ATPRNA 3'-terminal phosphate cyclase6.5.1.40.443
4bb3KKAIsopenicillin N synthase1.21.3.10.443
4j7xNAPSepiapterin reductase1.1.1.1530.443
1bk0ACVIsopenicillin N synthase1.21.3.10.442
2gh5FADGlutathione reductase, mitochondrial1.8.1.70.442
2ignFADPyranose 2-oxidase/0.442
2nnlNAPDihydroflavonol 4-reductase1.1.1.2190.442
2vkvTDCTetracycline repressor protein class D/0.442
3m4p4ADAsparaginyl-tRNA synthetase, putative/0.442
3nbvANPKetohexokinase/0.442
3p62FMNPentaerythritol tetranitrate reductase/0.442
3pxvFMNNitroreductase/0.442
4a4qUX9Pol protein/0.442
4auxXTCTetracycline repressor protein class D/0.442
4blrUTPNTPase P4/0.442
4h1vGNPDynamin-1-like protein3.6.5.50.442
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.442
4opgFDAConserved Archaeal protein/0.442
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.442
5idwNAPShort-chain dehydrogenase/reductase SDR/0.442
1dj2GDPAdenylosuccinate synthetase, chloroplastic/0.441
1fy7COAHistone acetyltransferase ESA1/0.441
1kqnNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.441
1tehNADAlcohol dehydrogenase class-31.1.1.10.441
2freFMNNAD(P)H-flavin oxidoreductase/0.441
2yq92AM2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.441
2z54AB1Gag-Pol polyprotein3.4.23.160.441
3kpbSAMUncharacterized protein MJ0100/0.441
3ox4NADAlcohol dehydrogenase 21.1.1.10.441
4acuQN7Beta-secretase 13.4.23.460.441
4oztP1AEcdysone receptor, putative/0.441
4xguADPPutative pachytene checkpoint protein 2/0.441
5fs7FADApoptosis-inducing factor 1, mitochondrial1.1.10.441
1hb1OCVIsopenicillin N synthase1.21.3.10.440
1i2bNADUDP-sulfoquinovose synthase, chloroplastic3.13.1.10.440
1jq5NADGlycerol dehydrogenase1.1.1.60.440
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.440
1tqf32PBeta-secretase 13.4.23.460.440
1x1dSAHC-20 methyltransferase/0.440
2c1bCQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.440
2ejvNADL-threonine 3-dehydrogenase/0.440
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.440
2hqmFADGlutathione reductase1.8.1.70.440
2ifaFMNUncharacterized protein/0.440
2q14ADPPhosphohydrolase/0.440
3axkNDPRibulose bisphosphate carboxylase large chain4.1.1.390.440
3eu5GBOProtein farnesyltransferase subunit beta2.5.1.580.440
3rsv3RSBeta-secretase 13.4.23.460.440
3sf6FDAGlutaryl-CoA dehydrogenase/0.440
3tscNADUncharacterized protein/0.440
3u33FADPutative acyl-CoA dehydrogenase AidB1.3.990.440
3x21FMNOxygen-insensitive NAD(P)H nitroreductase/0.440
4bv9NDPKetimine reductase mu-crystallin1.5.1.250.440
4jnkZHKL-lactate dehydrogenase A chain1.1.1.270.440
4loi1YCStimulator of interferon genes protein/0.440
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.440