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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4tqgNDPPutative dTDP-d-glucose 4 6-dehydratase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4tqgNDPPutative dTDP-d-glucose 4 6-dehydratase/1.000
5einNAP[LysW]-L-2-aminoadipate 6-phosphate reductase/0.511
1g6kNADGlucose 1-dehydrogenase1.1.1.470.497
2ztvNADD(-)-3-hydroxybutyrate dehydrogenase/0.496
4k6fNAPPutative Acetoacetyl-CoA reductase/0.494
4oqyNDP(S)-imine reductase/0.491
3tjzGNPADP-ribosylation factor 1/0.490
5eioNAP[LysW]-L-2-aminoadipate 6-phosphate reductase/0.485
5d3qGDPDynamin-13.6.5.50.484
1g1aNADdTDP-glucose 4,6-dehydratase/0.482
3lqfNADGalactitol dehydrogenase/0.481
4q71FADBifunctional protein PutA/0.481
2ejvNADL-threonine 3-dehydrogenase/0.478
3f03FMNPentaerythritol tetranitrate reductase/0.478
4dbzNDPPutative ketoacyl reductase1.3.10.478
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.477
1hdgNADGlyceraldehyde-3-phosphate dehydrogenase/0.477
3o03NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase)/0.476
1bvrNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.475
4egbNADdTDP-glucose 4,6-dehydratase/0.475
2fxv5GPXanthine phosphoribosyltransferase2.4.2.220.474
2hunNAD336aa long hypothetical dTDP-glucose 4,6-dehydratase/0.474
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.473
1xe55FEPlasmepsin-23.4.23.390.472
2bgmNAJSecoisolariciresinol dehydrogenase1.1.1.3310.472
3a3gDLZLumazine protein/0.471
1hdcCBO3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.470
3p74FMNPentaerythritol tetranitrate reductase/0.470
5b1yNDP3-oxoacyl-[acyl-carrier-protein] reductase/0.470
3p8jFMNPentaerythritol tetranitrate reductase/0.469
4hp8NAP2-deoxy-D-gluconate 3-dehydrogenase/0.469
5cpbNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.469
1ri4SAMmRNA cap guanine-N7 methyltransferase2.1.1.560.468
2a7r5GPGMP reductase 2/0.468
3oetNADErythronate-4-phosphate dehydrogenase/0.468
4jicFMNGTN Reductase/0.468
2xfsJ01Uncharacterized protein/0.467
2i3gNAPN-acetyl-gamma-glutamyl-phosphate reductase1.2.1.380.466
2iyfERYOleandomycin glycosyltransferase2.4.10.466
3orfNADDihydropteridine reductase1.5.1.340.466
1j49NADD-lactate dehydrogenase1.1.1.280.465
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.465
2rcyNAPPyrroline-5-carboxylate reductase/0.464
3d4pNADL-lactate dehydrogenase 11.1.1.270.464
4cvmANPUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase/0.464
4m83ERYOleandomycin glycosyltransferase2.4.10.464
3gqvNAPEnoyl reductase LovC10.463
3ndcSAHPrecorrin-4 C(11)-methyltransferase2.1.1.1330.463
1h5qNAPNADP-dependent mannitol dehydrogenase1.1.1.1380.462
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.462
2y4gTIRTamL/0.462
3lqsPSZD-alanine aminotransferase2.6.1.210.462
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.462
2dfvNADL-threonine 3-dehydrogenase/0.461
2g1o2IGRenin3.4.23.150.461
2y3rTRKTamL/0.461
3p62FMNPentaerythritol tetranitrate reductase/0.461
4esoNAPPutative oxidoreductase/0.461
1nqoNADGlyceraldehyde-3-phosphate dehydrogenase/0.460
3te5NAI5'-AMP-activated protein kinase subunit gamma/0.460
4cdmFO1Deoxyribodipyrimidine photolyase/0.460
4hbgNDP3-oxoacyl-[acyl-carrier-protein] reductase1.1.1.1000.460
1gcoNADGlucose 1-dehydrogenase1.1.1.470.459
2briANPUridylate kinase2.7.4.220.459
2g8yNADHydroxycarboxylate dehydrogenase B/0.459
3fwiCAMCamphor 5-monooxygenase1.14.15.10.459
3gfbNADL-threonine 3-dehydrogenase/0.459
4y0kNAPAntE/0.459
1e3sNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.458
1fk8NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase1.1.1.500.458
1gpdNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.458
1u3cFADCryptochrome-1/0.458
2aa3AP0L-lactate dehydrogenase/0.458
2hsdNAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.458
2wnsOMPUridine 5'-monophosphate synthase2.4.2.100.458
3sj7NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative/0.458
4b1rITCTetracycline repressor protein class D/0.458
1bw9NADPhenylalanine dehydrogenase/0.457
1ddsMTXDihydrofolate reductase1.5.1.30.457
1h51FMNPentaerythritol tetranitrate reductase/0.457
1jolFFODihydrofolate reductase1.5.1.30.457
1o9bNAIQuinate/shikimate dehydrogenase/0.457
1xe65FPPlasmepsin-23.4.23.390.457
2i7pACOPantothenate kinase 32.7.1.330.457
3ensENSCoagulation factor X3.4.21.60.457
4xr9NADCalS8/0.457
1nzdUPGDNA beta-glucosyltransferase/0.456
2ft9CHDFatty acid-binding protein 2, liver/0.456
2g1r3IGRenin3.4.23.150.456
2hfuMEVMevalonate kinase/0.456
2p5uNADUDP-glucose 4-epimerase/0.456
3fp0FP015-O-acetyltransferase/0.456
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.456
3otwCOAPhosphopantetheine adenylyltransferase/0.456
4g74FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.456
5a9sNAPPutative dehydrogenase/0.456
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.455
1o76CAMCamphor 5-monooxygenase1.14.15.10.455
3qt62P0Mevalonate diphosphate decarboxylase/0.455
4du82P0Mevalonate diphosphate decarboxylase/0.455
4i1iNADMalate dehydrogenase/0.455
4loi1YCStimulator of interferon genes protein/0.455
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.454
4l4fCAMCamphor 5-monooxygenase1.14.15.10.454
4qxq1YEStimulator of interferon genes protein/0.454
1bwsNDPGDP-L-fucose synthase/0.453
1geeNADGlucose 1-dehydrogenase1.1.1.470.453
1nvtNAPShikimate dehydrogenase (NADP(+))/0.453
2cy0NAPShikimate dehydrogenase (NADP(+))/0.453
2g1n1IGRenin3.4.23.150.453
2omeNADC-terminal-binding protein 2/0.453
3rueNADUDP-N-acetylglucosamine 4-epimerase/0.453
3wrhCAMCamphor 5-monooxygenase1.14.15.10.453
4e2dFMNDehydrogenase/0.453
1b5eDCMDeoxycytidylate 5-hydroxymethyltransferase2.1.2.80.452
1hkuNADC-terminal-binding protein 11.1.10.452
1t0lNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.452
1vbiNADMalate/L-lactate dehydrogenase family protein/0.452
1vsvNADGlyceraldehyde-3-phosphate dehydrogenase/0.452
1vyrFMNPentaerythritol tetranitrate reductase/0.452
1zxmANPDNA topoisomerase 2-alpha5.99.1.30.452
3axkNDPRibulose bisphosphate carboxylase large chain4.1.1.390.452
3bk2U5PRibonuclease J/0.452
3lsiFADPyranose 2-oxidase/0.452
3vqsJT1Genome polyprotein/0.452
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.452
4g6gFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.452
4ipw1G7Mycocyclosin synthase1.14.21.90.452
4u7wNDPMxaA/0.452
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.452
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.452
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.452
1i5aACPChemotaxis protein CheA2.7.13.30.451
1l5s700Glycogen phosphorylase, liver form2.4.1.10.451
1l7x700Glycogen phosphorylase, liver form2.4.1.10.451
1udaUFGUDP-glucose 4-epimerase5.1.3.20.451
2ddoATPPyridoxine/pyridoxal/pyridoxamine kinase/0.451
3gwfNAPCyclohexanone monooxygenase/0.451
3mk6ACOPantothenate kinase 32.7.1.330.451
3s55NADPutative short-chain dehydrogenase/reductase/0.451
4cukNAID-lactate dehydrogenase/0.451
3fwgCAMCamphor 5-monooxygenase1.14.15.10.450
4e5yNDPGDP-L-fucose synthase1.1.1.2710.450
4nbwNADShort-chain dehydrogenase/reductase SDR/0.450
4z38FMNMlnA/0.450
1h63FMNPentaerythritol tetranitrate reductase/0.449
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.449
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.449
2hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.449
2he5NDPAldo-keto reductase family 1 member C211.1.10.449
2q85973UDP-N-acetylenolpyruvoylglucosamine reductase1.3.1.980.449
3autNAIGlucose 1-dehydrogenase 41.1.1.470.449
3l63CAMCamphor 5-monooxygenase1.14.15.10.449
3ty3GGGHomoisocitrate dehydrogenase1.1.1.870.449
4dc0NDPPutative ketoacyl reductase1.3.10.449
4djaFAD(6-4) photolyase/0.449
4hbm0Y7E3 ubiquitin-protein ligase Mdm26.3.20.449
4lcjNADC-terminal-binding protein 2/0.449
4o63NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.449
4qxr1YEStimulator of interferon genes protein/0.449
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.448
1kh3ANPArgininosuccinate synthase/0.448
1mj9COAHistone acetyltransferase ESA1/0.448
2a94AP0L-lactate dehydrogenase1.1.1.270.448
2j07HDFDeoxyribodipyrimidine photo-lyase4.1.99.30.448
4eywL0RCarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.448
1h50FMNPentaerythritol tetranitrate reductase/0.447
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.447
1hdrNADDihydropteridine reductase1.5.1.340.447
2gn8NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting)4.2.1.1150.447
2hmaSAMtRNA-specific 2-thiouridylase MnmA/0.447
2q9fC3SCholesterol 24-hydroxylase/0.447
2vkeTACTetracycline repressor protein class D/0.447
3atzFMNProstaglandin F2a synthase/0.447
3r7kFDAProbable acyl CoA dehydrogenase/0.447
4ihl1F514-3-3 protein zeta/delta/0.447
4n5nNAPAcetoacetyl-CoA reductase1.1.1.360.447
5cfpC2EStimulator of interferon genes protein/0.447
1ddrMTXDihydrofolate reductase1.5.1.30.446
2fr0NDP6-deoxyerythronolide-B synthase EryA1, modules 1 and 2/0.446
2vutNADNitrogen metabolite repression protein nmrA/0.446
3etgNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.446
3ig6438Urokinase-type plasminogen activator3.4.21.730.446
3w2uROUDihydroorotate dehydrogenase (fumarate)1.3.98.10.446
3zhbNAPPutative dehydrogenase/0.446
4qnwFMNChanoclavine-I aldehyde reductase easA/0.446
4u0mGTPCyclic GMP-AMP synthase/0.446
4yvz3ATDNA integrity scanning protein DisA/0.446
1b2lNDCAlcohol dehydrogenase1.1.1.10.445
1dhrNADDihydropteridine reductase1.5.1.340.445
2a92NAIL-lactate dehydrogenase/0.445
2i7nACOPantothenate kinase 12.7.1.330.445
2q2qNADBeta-D-hydroxybutyrate dehydrogenase/0.445
2zjmF1MBeta-secretase 13.4.23.460.445
3eheNADUDP-glucose 4-epimerase (GalE-1)/0.445
3f1kNAPUncharacterized oxidoreductase YciK10.445
3gwfFADCyclohexanone monooxygenase/0.445
3p82FMNPentaerythritol tetranitrate reductase/0.445
3rudNADUDP-N-acetylglucosamine 4-epimerase/0.445
3wycNAPMeso-diaminopimelate D-dehydrogenase1.4.1.160.445
4e5pNADPhosphonate dehydrogenase1.20.1.10.445
4ji91M3Tyrosine-protein kinase JAK2/0.445
4p63NADProbable deoxyhypusine synthase2.5.1.460.445
4qecNAPElxO/0.445
5c8wPCGcGMP-dependent protein kinase 22.7.11.120.445
1dirNADDihydropteridine reductase1.5.1.340.444
1x1aSAMC-20 methyltransferase/0.444
1yqzCOACoenzyme A disulfide reductase/0.444
2b4qNAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase1.1.1.1000.444
2dftADPShikimate kinase2.7.1.710.444
2vuuNAPNitrogen metabolite repression protein nmrA/0.444
3gkaFMNN-ethylmaleimide reductase/0.444
3p84FMNPentaerythritol tetranitrate reductase/0.444
4enhFVXCholesterol 24-hydroxylase/0.444
4gyzD5MTyrosyl-DNA phosphodiesterase 23.1.40.444
4nd3NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.444
4uymVOR14-alpha sterol demethylase Cyp51B/0.444
4yj2GTPTubulin alpha-1B chain/0.444
5bt9NAP3-oxoacyl-(Acyl-carrier-protein) reductase/0.444
1ds7FMNOxygen-insensitive NAD(P)H nitroreductase/0.443
1vjtNADAlpha-glucosidase, putative/0.443
1w6hTITPlasmepsin-23.4.23.390.443
1xkvATPPhosphoenolpyruvate carboxykinase (ATP)/0.443
2a1hGBNBranched-chain-amino-acid aminotransferase, mitochondrial2.6.1.420.443
2a1nCAMCamphor 5-monooxygenase1.14.15.10.443
2xpuTDCTetracycline repressor protein class D/0.443
3b70NAPEnoyl reductase LovC10.443
3uceNDPDehydrogenase/0.443
3w233RODihydroorotate dehydrogenase (fumarate)1.3.98.10.443
4z0hNADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic1.2.1.120.443
1culFOKAdenylate cyclase type 2/0.442
1culFOKAdenylate cyclase type 5/0.442
2x0iNAIMalate dehydrogenase/0.442
3hlwCE3Beta-lactamase/0.442
3kb1ADPIron-sulfur cluster carrier protein/0.442
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.442
3ru7NADUDP-N-acetylglucosamine 4-epimerase/0.442
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.442
3s87ADPRibonucleoside-diphosphate reductase large chain 11.17.4.10.442
3w1tWRODihydroorotate dehydrogenase (fumarate)1.3.98.10.442
3x21FMNOxygen-insensitive NAD(P)H nitroreductase/0.442
4kbyC2EStimulator of interferon genes protein/0.442
4xiwAZMCarbonic anhydrase, alpha type/0.442
5fm7ADPRuvB-like helicase/0.442
2eklNADD-3-phosphoglycerate dehydrogenase/0.441
2ou2ACOHistone acetyltransferase KAT5/0.441
2rlcCHDCholoylglycine hydrolase3.5.1.240.441
2uxoTACHTH-type transcriptional regulator TtgR/0.441
4b4vL34Bifunctional protein FolD/0.441
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.441
4fdaNAP3-oxoacyl-[acyl-carrier-protein] reductase1.1.1.1000.441
4gllNADUDP-glucuronic acid decarboxylase 14.1.1.350.441
4l6gCNL1,8-cineole 2-endo-monooxygenase1.14.13.1560.441
4wecNADShort chain dehydrogenase/0.441
4yaoFMNNADPH--cytochrome P450 reductase/0.441
5a1tNAIL-lactate dehydrogenase/0.441
5dt9NADErythronate-4-phosphate dehydrogenase/0.441
1np7FADCryptochrome DASH/0.440
1rfgGMPPurine nucleoside phosphorylase2.4.2.10.440
1rfuADPPyridoxal kinase2.7.1.350.440
1t85CAMCamphor 5-monooxygenase1.14.15.10.440
1t87CAMCamphor 5-monooxygenase1.14.15.10.440
1vi2NADQuinate/shikimate dehydrogenase/0.440
2bb3SAHCobalamin biosynthesis precorrin-6Y methylase (CbiE)/0.440
2ggsNDPdTDP-4-dehydrorhamnose reductase/0.440
2vtbFADCryptochrome DASH, chloroplastic/mitochondrial/0.440
2w6zL21Biotin carboxylase6.3.4.140.440
2watCOAFatty acid synthase subunit alpha2.3.1.860.440
3a1cACPProbable copper-exporting P-type ATPase A3.6.3.540.440
3lsmSFDPyranose 2-oxidase/0.440
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.440
3nmpPYVAbscisic acid receptor PYL2/0.440
3qlsNDPDihydrofolate reductase1.5.1.30.440
3s1dZIRCytokinin dehydrogenase 11.5.99.120.440
3uylTYDProbable NDP-rhamnosyltransferase/0.440
3wrjCAMCamphor 5-monooxygenase1.14.15.10.440
4brgGNPEctonucleoside triphosphate diphosphohydrolase I/0.440
4dptAGSMevalonate diphosphate decarboxylase/0.440
4g3rCAMCamphor 5-monooxygenase1.14.15.10.440
4px9ADPATP-dependent RNA helicase DDX3X3.6.4.130.440
4q72FADBifunctional protein PutA/0.440
5ftfADPTPR domain protein/0.440