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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4tmbFMNOld yellow enzyme

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4tmbFMNOld yellow enzyme/1.000
4rnvFMNNADPH dehydrogenase 11.6.99.10.566
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.552
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.549
1icpFMN12-oxophytodienoate reductase 11.3.1.420.548
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.539
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.527
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.523
1icqFMN12-oxophytodienoate reductase 11.3.1.420.522
4rnwFMNNADPH dehydrogenase 11.6.99.10.522
1icsFMN12-oxophytodienoate reductase 11.3.1.420.520
4rnuFMNNADPH dehydrogenase 11.6.99.10.513
1q45FMN12-oxophytodienoate reductase 31.3.1.420.511
3f03FMNPentaerythritol tetranitrate reductase/0.497
4jicFMNGTN Reductase/0.497
1h50FMNPentaerythritol tetranitrate reductase/0.494
3p82FMNPentaerythritol tetranitrate reductase/0.493
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.487
3gkaFMNN-ethylmaleimide reductase/0.485
3p74FMNPentaerythritol tetranitrate reductase/0.485
1vyrFMNPentaerythritol tetranitrate reductase/0.484
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.481
2abbFMNPentaerythritol tetranitrate reductase/0.480
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.474
1h63FMNPentaerythritol tetranitrate reductase/0.459
1bwkFMNNADPH dehydrogenase 11.6.99.10.458
1bwlFMNNADPH dehydrogenase 11.6.99.10.455
1oyaFMNNADPH dehydrogenase 11.6.99.10.454
3p67FMNPentaerythritol tetranitrate reductase/0.451
4tmcFMNOld yellow enzyme/0.450
4e2bFMNDehydrogenase/0.449
3atzFMNProstaglandin F2a synthase/0.448
4h6kFMNNADPH dehydrogenase 11.6.99.10.448
3p62FMNPentaerythritol tetranitrate reductase/0.446
1oycFMNNADPH dehydrogenase 11.6.99.10.442
4e2dFMNDehydrogenase/0.442
4awtFMNNADH:flavin oxidoreductase Sye1/0.440