scPDB - Distribution of Binding site Similarity values of 4tm1 entry / Site 2

Distribution of Binding site similarity measured by Shaper

You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4tm1	FDA	KtzI

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
4tm1	FDA	KtzI	/	1.000
4tm4	FDA	KtzI	/	0.634
4tlx	FDA	KtzI	/	0.590
4tlz	FAD	KtzI	/	0.574
4b65	FAD	L-ornithine N(5)-monooxygenase	/	0.539
4tm3	FAD	KtzI	/	0.526
4b68	FAD	L-ornithine N(5)-monooxygenase	/	0.517
4b63	FAD	L-ornithine N(5)-monooxygenase	/	0.513
4b66	FAD	L-ornithine N(5)-monooxygenase	/	0.505
4b64	FAD	L-ornithine N(5)-monooxygenase	/	0.493
5cku	FAD	L-ornithine N(5)-monooxygenase	/	0.488
3s5w	FAD	L-ornithine N(5)-monooxygenase	/	0.451
4b67	FAD	L-ornithine N(5)-monooxygenase	/	0.447
4nzh	FAD	L-ornithine N(5)-monooxygenase	/	0.441