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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4rw6494Gag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4rw6494Gag-Pol polyprotein2.7.7.491.000
4rw4494Gag-Pol polyprotein2.7.7.490.663
4h4o506Gag-Pol polyprotein2.7.7.490.572
4h4m494Gag-Pol polyprotein2.7.7.490.548
3is9AC7Gag-Pol polyprotein2.7.7.490.544
3dmjGWEPol protein/0.543
3c6uM22Gag-Pol polyprotein2.7.7.490.541
3dokGWJPol protein/0.531
3t1a5MAGag-Pol polyprotein2.7.7.490.527
4mfb29TGag-Pol polyprotein2.7.7.490.524
3dyaPZLGag-Pol polyprotein2.7.7.490.523
3c6tM14Gag-Pol polyprotein2.7.7.490.518
3drrR8EGag-Pol polyprotein2.7.7.490.510
2wonZZEGag-Pol polyprotein2.7.7.490.508
3drpR8EGag-Pol polyprotein2.7.7.490.496
4lsl1YQGag-Pol polyprotein2.7.7.490.494
3t195MAGag-Pol polyprotein2.7.7.490.488
2b5j3ACGag-Pol polyprotein2.7.7.490.486
2be2R22Gag-Pol polyprotein2.7.7.490.482
3tamM06Gag-Pol polyprotein2.7.7.490.481
3irxUDRGag-Pol polyprotein2.7.7.490.479
3qlhT27Gag-Pol polyprotein2.7.7.490.474
3lalKRVGag-Pol polyprotein2.7.7.490.472
3lakKR1Gag-Pol polyprotein2.7.7.490.468
3bgrT27Gag-Pol polyprotein2.7.7.490.464
3dlgGWEGag-Pol polyprotein2.7.7.490.464
3e01PZ2Gag-Pol polyprotein2.7.7.490.464
2ynhEURGag-Pol polyprotein2.7.7.490.456
4i2pG73Gag-Pol polyprotein2.7.7.490.453
1c1bGCAGag-Pol polyprotein2.7.7.490.450
2ze2T27Gag-Pol polyprotein2.7.7.490.450
2ynfWHUGag-Pol polyprotein2.7.7.490.449
2jleI15Reverse transcriptase/RNaseH/0.444