scPDB - Distribution of Binding site Similarity values of 4rtp entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4rtp	SAM	DNA adenine methylase	2.1.1.72

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
4rtp	SAM	DNA adenine methylase	2.1.1.72	1.000
4rtn	SAH	DNA adenine methylase	2.1.1.72	0.716
4rtm	SAM	DNA adenine methylase	2.1.1.72	0.663
4rtj	SFG	DNA adenine methylase	2.1.1.72	0.641
4gbe	SAH	DNA adenine methylase	2.1.1.72	0.637
2ore	SAH	DNA adenine methylase	2.1.1.72	0.622
4gol	SA8	DNA adenine methylase	2.1.1.72	0.621
4rtr	SAM	DNA adenine methylase	2.1.1.72	0.620
4rtk	SAH	DNA adenine methylase	2.1.1.72	0.613
2g1p	SAH	DNA adenine methylase	2.1.1.72	0.601
4rtl	SFG	DNA adenine methylase	2.1.1.72	0.578
4rtq	SAH	DNA adenine methylase	2.1.1.72	0.566
4rto	SFG	DNA adenine methylase	2.1.1.72	0.563
2dpm	SAM	Modification methylase DpnIIA	2.1.1.72	0.547
4rts	SAM	DNA adenine methylase	2.1.1.72	0.523
1boo	SAH	Modification methylase PvuII	2.1.1.113	0.502
1nw5	SAM	Modification methylase RsrI	2.1.1.72	0.490
4h0n	SAH	Dnmt2	/	0.490
3swr	SFG	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.478
4anx	534	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform	2.7.1.153	0.478
3ldf	SAH	Uncharacterized protein	/	0.477
4onj	SFG	DNA methyltransferase	/	0.470
3v97	SAH	Ribosomal RNA large subunit methyltransferase K/L	2.1.1.173	0.467
3pt9	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.463
1nw6	SFG	Modification methylase RsrI	2.1.1.72	0.462
2eg5	SAH	7-methylxanthosine synthase 1	/	0.462
3qv2	SAH	5-cytosine DNA methyltransferase	/	0.462
4dmg	SAM	Uncharacterized protein	/	0.459
1eg2	MTA	Modification methylase RsrI	2.1.1.72	0.453
3pt6	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.453
4wxx	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.453
2ih2	NEA	Modification methylase TaqI	2.1.1.72	0.451
3tm5	SFG	Uncharacterized protein	/	0.447
3crz	FAD	Ferredoxin--NADP+ reductase	/	0.446
3a7d	FBN	Catechol O-methyltransferase	2.1.1.6	0.445
2uzv	SS5	cAMP-dependent protein kinase catalytic subunit alpha	2.7.11.11	0.444
1g38	NEA	Modification methylase TaqI	2.1.1.72	0.441
2po7	CHD	Ferrochelatase, mitochondrial	4.99.1.1	0.441
3v8v	SAM	Ribosomal RNA large subunit methyltransferase K/L	2.1.1.173	0.441