scPDB - Distribution of Binding site Similarity values of 4rtn entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4rtn	SAH	DNA adenine methylase	2.1.1.72

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
4rtn	SAH	DNA adenine methylase	2.1.1.72	1.000
4rtp	SAM	DNA adenine methylase	2.1.1.72	0.684
4rto	SFG	DNA adenine methylase	2.1.1.72	0.634
4rtr	SAM	DNA adenine methylase	2.1.1.72	0.625
2ore	SAH	DNA adenine methylase	2.1.1.72	0.612
4gol	SA8	DNA adenine methylase	2.1.1.72	0.605
4rtl	SFG	DNA adenine methylase	2.1.1.72	0.588
4gbe	SAH	DNA adenine methylase	2.1.1.72	0.584
4rtm	SAM	DNA adenine methylase	2.1.1.72	0.560
4rtk	SAH	DNA adenine methylase	2.1.1.72	0.556
4rts	SAM	DNA adenine methylase	2.1.1.72	0.553
2g1p	SAH	DNA adenine methylase	2.1.1.72	0.549
4rtj	SFG	DNA adenine methylase	2.1.1.72	0.533
4rtq	SAH	DNA adenine methylase	2.1.1.72	0.515
2dpm	SAM	Modification methylase DpnIIA	2.1.1.72	0.497
1boo	SAH	Modification methylase PvuII	2.1.1.113	0.494
3v97	SAH	Ribosomal RNA large subunit methyltransferase K/L	2.1.1.173	0.458
1nw5	SAM	Modification methylase RsrI	2.1.1.72	0.450
3ldf	SAH	Uncharacterized protein	/	0.446
4dmg	SAM	Uncharacterized protein	/	0.445
4anx	534	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform	2.7.1.153	0.444
2ih2	NEA	Modification methylase TaqI	2.1.1.72	0.440