scPDB - Distribution of Binding site Similarity values of 4rtm entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4rtm	SAM	DNA adenine methylase	2.1.1.72

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
4rtm	SAM	DNA adenine methylase	2.1.1.72	1.000
4rtk	SAH	DNA adenine methylase	2.1.1.72	0.667
4rtj	SFG	DNA adenine methylase	2.1.1.72	0.660
4gbe	SAH	DNA adenine methylase	2.1.1.72	0.606
4rts	SAM	DNA adenine methylase	2.1.1.72	0.599
2g1p	SAH	DNA adenine methylase	2.1.1.72	0.577
4rtr	SAM	DNA adenine methylase	2.1.1.72	0.576
4gol	SA8	DNA adenine methylase	2.1.1.72	0.571
4rtp	SAM	DNA adenine methylase	2.1.1.72	0.561
4rtl	SFG	DNA adenine methylase	2.1.1.72	0.533
2ore	SAH	DNA adenine methylase	2.1.1.72	0.530
2dpm	SAM	Modification methylase DpnIIA	2.1.1.72	0.520
4rto	SFG	DNA adenine methylase	2.1.1.72	0.507
4rtn	SAH	DNA adenine methylase	2.1.1.72	0.503
4rtq	SAH	DNA adenine methylase	2.1.1.72	0.466