scPDB - Distribution of Binding site Similarity values of 4rtl entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4rtl	SFG	DNA adenine methylase	2.1.1.72

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
4rtl	SFG	DNA adenine methylase	2.1.1.72	1.000
2g1p	SAH	DNA adenine methylase	2.1.1.72	0.592
4gbe	SAH	DNA adenine methylase	2.1.1.72	0.571
4rtj	SFG	DNA adenine methylase	2.1.1.72	0.570
4rts	SAM	DNA adenine methylase	2.1.1.72	0.562
4rtr	SAM	DNA adenine methylase	2.1.1.72	0.551
2dpm	SAM	Modification methylase DpnIIA	2.1.1.72	0.548
4rtm	SAM	DNA adenine methylase	2.1.1.72	0.548
2ore	SAH	DNA adenine methylase	2.1.1.72	0.534
4rto	SFG	DNA adenine methylase	2.1.1.72	0.523
4rtk	SAH	DNA adenine methylase	2.1.1.72	0.522
4rtn	SAH	DNA adenine methylase	2.1.1.72	0.519
4gol	SA8	DNA adenine methylase	2.1.1.72	0.494
4rtq	SAH	DNA adenine methylase	2.1.1.72	0.483
4rtp	SAM	DNA adenine methylase	2.1.1.72	0.482
4dmg	SAM	Uncharacterized protein	/	0.450
1boo	SAH	Modification methylase PvuII	2.1.1.113	0.444
3ldf	SAH	Uncharacterized protein	/	0.441