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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4rnxFMNNADPH dehydrogenase 11.6.99.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4rnxFMNNADPH dehydrogenase 11.6.99.11.000
1oyaFMNNADPH dehydrogenase 11.6.99.10.604
1bwkFMNNADPH dehydrogenase 11.6.99.10.596
1oycFMNNADPH dehydrogenase 11.6.99.10.587
1bwlFMNNADPH dehydrogenase 11.6.99.10.584
4h6kFMNNADPH dehydrogenase 11.6.99.10.582
4k7yFMNNADPH dehydrogenase 11.6.99.10.582
3p74FMNPentaerythritol tetranitrate reductase/0.564
1vyrFMNPentaerythritol tetranitrate reductase/0.554
4rnvFMNNADPH dehydrogenase 11.6.99.10.551
2abbFMNPentaerythritol tetranitrate reductase/0.548
3p8iFMNPentaerythritol tetranitrate reductase/0.548
1h50FMNPentaerythritol tetranitrate reductase/0.547
1h63FMNPentaerythritol tetranitrate reductase/0.534
4tmcFMNOld yellow enzyme/0.534
3p82FMNPentaerythritol tetranitrate reductase/0.529
3p84FMNPentaerythritol tetranitrate reductase/0.521
4rnwFMNNADPH dehydrogenase 11.6.99.10.520
1k02FMNNADPH dehydrogenase 11.6.99.10.519
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.518
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.517
3f03FMNPentaerythritol tetranitrate reductase/0.517
3p62FMNPentaerythritol tetranitrate reductase/0.517
1icpFMN12-oxophytodienoate reductase 11.3.1.420.513
4tmbFMNOld yellow enzyme/0.513
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.511
1icqFMN12-oxophytodienoate reductase 11.3.1.420.509
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.508
3gkaFMNN-ethylmaleimide reductase/0.507
3p67FMNPentaerythritol tetranitrate reductase/0.507
4e2dFMNDehydrogenase/0.507
1h51FMNPentaerythritol tetranitrate reductase/0.505
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.505
4m5pFMNNADPH dehydrogenase/0.505
4df2FMNNADPH dehydrogenase/0.501
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.499
1icsFMN12-oxophytodienoate reductase 11.3.1.420.492
4rnuFMNNADPH dehydrogenase 11.6.99.10.491
4awtFMNNADH:flavin oxidoreductase Sye1/0.490
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.489
1goxFMNPeroxisomal (S)-2-hydroxy-acid oxidase1.1.3.150.486
2gouFMNNADH:flavin oxidoreductase Sye1/0.486
3p8jFMNPentaerythritol tetranitrate reductase/0.486
4qaiFMNNADPH dehydrogenase/0.486
3tjlFMNNADPH dehydrogenase/0.484
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.482
4e2bFMNDehydrogenase/0.479
1q45FMN12-oxophytodienoate reductase 31.3.1.420.477
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.474
4b5nFMNNAD(P)H:flavin oxidoreductase Sye4/0.472
4jicFMNGTN Reductase/0.471
1kbjFMNCytochrome b2, mitochondrial1.1.2.30.470
1szgFNSCytochrome b2, mitochondrial1.1.2.30.468
2j6xFMNLactate oxidase/0.467
3n19FNRXenobiotic reductase/0.466
2e77FMNLactate oxidase/0.464
3atzFMNProstaglandin F2a synthase/0.462
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.461
1dxqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.460
3l5lFMNXenobiotic reductase/0.456
1z44FMNNADPH dehydrogenase/0.452
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.452
3v2uATPProtein GAL3/0.449
4awsFMNNADH:flavin oxidoreductase Sye1/0.449
4q71FADBifunctional protein PutA/0.449
3bi2FADPolyamine oxidase FMS1/0.446
3giyFMN(S)-mandelate dehydrogenase1.1.99.310.446
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.446
4yl2FMNLactate oxidase/0.445
1gzuNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.444
1z48FMNNADPH dehydrogenase/0.443
4uthFMNXenobiotic reductase/0.443
4dieC5PCytidylate kinase/0.442
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.440
1rneC60Renin3.4.23.150.440