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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4rnwFMNNADPH dehydrogenase 11.6.99.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4rnwFMNNADPH dehydrogenase 11.6.99.11.000
4tmbFMNOld yellow enzyme/0.640
4rnvFMNNADPH dehydrogenase 11.6.99.10.637
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.589
1icsFMN12-oxophytodienoate reductase 11.3.1.420.570
4rnuFMNNADPH dehydrogenase 11.6.99.10.570
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.567
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.559
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.558
1vyrFMNPentaerythritol tetranitrate reductase/0.556
4tmcFMNOld yellow enzyme/0.553
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.551
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.551
1icqFMN12-oxophytodienoate reductase 11.3.1.420.549
3p82FMNPentaerythritol tetranitrate reductase/0.548
1icpFMN12-oxophytodienoate reductase 11.3.1.420.545
3f03FMNPentaerythritol tetranitrate reductase/0.545
3p67FMNPentaerythritol tetranitrate reductase/0.545
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.532
3p74FMNPentaerythritol tetranitrate reductase/0.529
1bwkFMNNADPH dehydrogenase 11.6.99.10.528
3p62FMNPentaerythritol tetranitrate reductase/0.528
1k02FMNNADPH dehydrogenase 11.6.99.10.516
1oycFMNNADPH dehydrogenase 11.6.99.10.516
1oyaFMNNADPH dehydrogenase 11.6.99.10.513
1h50FMNPentaerythritol tetranitrate reductase/0.510
1h63FMNPentaerythritol tetranitrate reductase/0.510
1h51FMNPentaerythritol tetranitrate reductase/0.507
3gkaFMNN-ethylmaleimide reductase/0.507
4h6kFMNNADPH dehydrogenase 11.6.99.10.505
4jicFMNGTN Reductase/0.505
2abbFMNPentaerythritol tetranitrate reductase/0.504
1q45FMN12-oxophytodienoate reductase 31.3.1.420.500
4df2FMNNADPH dehydrogenase/0.497
1bwlFMNNADPH dehydrogenase 11.6.99.10.496
4e2bFMNDehydrogenase/0.492
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.487
4rnxFMNNADPH dehydrogenase 11.6.99.10.486
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.484
4m5pFMNNADPH dehydrogenase/0.484
3atzFMNProstaglandin F2a synthase/0.483
1z44FMNNADPH dehydrogenase/0.477
3p8iFMNPentaerythritol tetranitrate reductase/0.477
4e2dFMNDehydrogenase/0.477
3p84FMNPentaerythritol tetranitrate reductase/0.465
4qnwFMNChanoclavine-I aldehyde reductase easA/0.464
2gouFMNNADH:flavin oxidoreductase Sye1/0.463
4k7yFMNNADPH dehydrogenase 11.6.99.10.463
3p8jFMNPentaerythritol tetranitrate reductase/0.461
4uthFMNXenobiotic reductase/0.460
4b5nFMNNAD(P)H:flavin oxidoreductase Sye4/0.457
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.453
4awtFMNNADH:flavin oxidoreductase Sye1/0.453
3hf3FMNChromate reductase/0.452
3n14FMNXenobiotic reductase/0.452
1gg5FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.447
3atyFMNProstaglandin F2a synthase/0.445
3tjlFMNNADPH dehydrogenase/0.445
1nuqNXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.444
1z48FMNNADPH dehydrogenase/0.444
2geuCOKPantothenate kinase2.7.1.330.444
2qjoNADBifunctional NMN adenylyltransferase/Nudix hydrolase2.7.7.10.444
3kruFMNNADH:flavin oxidoreductase/NADH oxidase/0.443
1szgFNSCytochrome b2, mitochondrial1.1.2.30.442
3l5lFMNXenobiotic reductase/0.442
1kbiFMNCytochrome b2, mitochondrial1.1.2.30.440