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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4rnvFMNNADPH dehydrogenase 11.6.99.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4rnvFMNNADPH dehydrogenase 11.6.99.11.000
4tmbFMNOld yellow enzyme/0.609
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.580
4rnwFMNNADPH dehydrogenase 11.6.99.10.571
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.557
1icpFMN12-oxophytodienoate reductase 11.3.1.420.556
4rnuFMNNADPH dehydrogenase 11.6.99.10.553
1icsFMN12-oxophytodienoate reductase 11.3.1.420.546
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.541
1icqFMN12-oxophytodienoate reductase 11.3.1.420.538
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.532
1q45FMN12-oxophytodienoate reductase 31.3.1.420.519
1vyrFMNPentaerythritol tetranitrate reductase/0.516
1oycFMNNADPH dehydrogenase 11.6.99.10.514
1bwkFMNNADPH dehydrogenase 11.6.99.10.511
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.507
1h63FMNPentaerythritol tetranitrate reductase/0.503
3p74FMNPentaerythritol tetranitrate reductase/0.501
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.496
3p62FMNPentaerythritol tetranitrate reductase/0.495
4tmcFMNOld yellow enzyme/0.494
4jicFMNGTN Reductase/0.493
3p82FMNPentaerythritol tetranitrate reductase/0.490
1bwlFMNNADPH dehydrogenase 11.6.99.10.488
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.486
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.485
3tjlFMNNADPH dehydrogenase/0.482
4k7yFMNNADPH dehydrogenase 11.6.99.10.481
1oyaFMNNADPH dehydrogenase 11.6.99.10.476
4h6kFMNNADPH dehydrogenase 11.6.99.10.476
4rnxFMNNADPH dehydrogenase 11.6.99.10.473
4e2bFMNDehydrogenase/0.470
2abbFMNPentaerythritol tetranitrate reductase/0.469
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.467
4m5pFMNNADPH dehydrogenase/0.465
4qnwFMNChanoclavine-I aldehyde reductase easA/0.462
3p67FMNPentaerythritol tetranitrate reductase/0.460
1h50FMNPentaerythritol tetranitrate reductase/0.458
3l5lFMNXenobiotic reductase/0.457
3atzFMNProstaglandin F2a synthase/0.451
3p8iFMNPentaerythritol tetranitrate reductase/0.450
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.447
3gkaFMNN-ethylmaleimide reductase/0.447
4e2dFMNDehydrogenase/0.445
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441
4awtFMNNADH:flavin oxidoreductase Sye1/0.440