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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4rnuFMNNADPH dehydrogenase 11.6.99.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4rnuFMNNADPH dehydrogenase 11.6.99.11.000
4rnvFMNNADPH dehydrogenase 11.6.99.10.559
4tmbFMNOld yellow enzyme/0.550
1icpFMN12-oxophytodienoate reductase 11.3.1.420.536
4e2dFMNDehydrogenase/0.525
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.523
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.521
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.519
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.513
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.513
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.507
3p74FMNPentaerythritol tetranitrate reductase/0.505
4rnwFMNNADPH dehydrogenase 11.6.99.10.504
3f03FMNPentaerythritol tetranitrate reductase/0.501
1q45FMN12-oxophytodienoate reductase 31.3.1.420.496
4e2bFMNDehydrogenase/0.496
1h50FMNPentaerythritol tetranitrate reductase/0.493
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.490
1vyrFMNPentaerythritol tetranitrate reductase/0.489
1icqFMN12-oxophytodienoate reductase 11.3.1.420.487
2abbFMNPentaerythritol tetranitrate reductase/0.482
3p82FMNPentaerythritol tetranitrate reductase/0.479
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.475
1icsFMN12-oxophytodienoate reductase 11.3.1.420.474
3atzFMNProstaglandin F2a synthase/0.469
3p62FMNPentaerythritol tetranitrate reductase/0.467
1h63FMNPentaerythritol tetranitrate reductase/0.466
3atyFMNProstaglandin F2a synthase/0.466
4jicFMNGTN Reductase/0.465
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.458
3p67FMNPentaerythritol tetranitrate reductase/0.455
1dxqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.454
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.454
3gkaFMNN-ethylmaleimide reductase/0.454
4h6kFMNNADPH dehydrogenase 11.6.99.10.453
1oycFMNNADPH dehydrogenase 11.6.99.10.452
1gg5FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.450
3l5lFMNXenobiotic reductase/0.450
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.446
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.445
1oyaFMNNADPH dehydrogenase 11.6.99.10.445
4tmcFMNOld yellow enzyme/0.443
1bwlFMNNADPH dehydrogenase 11.6.99.10.442
1h51FMNPentaerythritol tetranitrate reductase/0.442
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441