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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4qnwFMNChanoclavine-I aldehyde reductase easA

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4qnwFMNChanoclavine-I aldehyde reductase easA/1.000
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.498
1icsFMN12-oxophytodienoate reductase 11.3.1.420.487
3p62FMNPentaerythritol tetranitrate reductase/0.485
3hf3FMNChromate reductase/0.484
1icqFMN12-oxophytodienoate reductase 11.3.1.420.480
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.479
1icpFMN12-oxophytodienoate reductase 11.3.1.420.476
2abbFMNPentaerythritol tetranitrate reductase/0.473
1vyrFMNPentaerythritol tetranitrate reductase/0.471
3p8jFMNPentaerythritol tetranitrate reductase/0.471
3f03FMNPentaerythritol tetranitrate reductase/0.467
4rnvFMNNADPH dehydrogenase 11.6.99.10.466
4tmbFMNOld yellow enzyme/0.457
1z44FMNNADPH dehydrogenase/0.456
3p84FMNPentaerythritol tetranitrate reductase/0.453
1h50FMNPentaerythritol tetranitrate reductase/0.452
1h51FMNPentaerythritol tetranitrate reductase/0.452
1h63FMNPentaerythritol tetranitrate reductase/0.446
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.445
3p74FMNPentaerythritol tetranitrate reductase/0.445
3p67FMNPentaerythritol tetranitrate reductase/0.444
3p8iFMNPentaerythritol tetranitrate reductase/0.443
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.441
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.440
3kruFMNNADH:flavin oxidoreductase/NADH oxidase/0.440