Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4qi7FADCellobiose dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4qi7FADCellobiose dehydrogenase/1.000
4qi4FADCellobiose dehydrogenase/0.644
4qi5FADCellobiose dehydrogenase/0.619
4u2lSFDCholesterol oxidase1.1.3.60.471
4u2sFDACholesterol oxidase1.1.3.60.470
1n4uFAECholesterol oxidase1.1.3.60.467
1mxtFAECholesterol oxidase1.1.3.60.465
1galFADGlucose oxidase1.1.3.40.460
1cc2FADCholesterol oxidase1.1.3.60.456
3coxFADCholesterol oxidase1.1.3.60.452
5hsaFASAlcohol oxidase 11.1.3.130.452
3cnjFADCholesterol oxidase1.1.3.60.447
4yntFDAGlucose oxidase, putative/0.447
3k4nFADPyranose 2-oxidase/0.445
1cf3FADGlucose oxidase1.1.3.40.444