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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4qa1B3NHistone deacetylase 83.5.1.98

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4qa1B3NHistone deacetylase 83.5.1.981.000
4qa2SHHHistone deacetylase 83.5.1.980.608
3ezpB3NHistone deacetylase 83.5.1.980.602
5dc5B3NHistone deacetylase 83.5.1.980.585
4qa0SHHHistone deacetylase 83.5.1.980.559
5d1bTSNHistone deacetylase 83.5.1.980.548
2v5xV5XHistone deacetylase 83.5.1.980.497
1w22NHBHistone deacetylase 83.5.1.980.473