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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4q4kFMNUncharacterized protein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4q4kFMNUncharacterized protein/1.000
3bw2FMNPutative 2-nitropropane dioxygenase/0.618
3bw4FMNPutative 2-nitropropane dioxygenase/0.614
3bw3FMNPutative 2-nitropropane dioxygenase/0.537
1egeFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.462
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.462
2iko7IGRenin3.4.23.150.461
4iqlFMNEnoyl-(Acyl-carrier-protein) reductase II/0.452
1udyFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.450
2wf3ZY3Beta-secretase 13.4.23.460.449
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.447
1rx0FADIsobutyryl-CoA dehydrogenase, mitochondrial1.3.990.445
3oqfS51Renin3.4.23.150.445
4q71FADBifunctional protein PutA/0.444
1gg5FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.443
1u8vFAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase/0.442
2hpvFMNFMN-dependent NADH-azoreductase1.70.442
4q0kGA3Phytohormone-binding protein/0.442
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441
2hydADPPutative multidrug export ATP-binding/permease protein SAV18663.6.30.441
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.440
4ambDUDPutative glycosyl transferase/0.440
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.440