Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4q4cADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4q4cADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2/1.000
3t9fADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2/0.754
3t9dANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2/0.727
3t9eADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2/0.667
3t9aANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2/0.592
3t99ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2/0.562
4nzoANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2/0.511
3t54ATPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2/0.494
3g8dADPBiotin carboxylase6.3.4.140.485
2dcnADP2-keto-3-deoxy-gluconate kinase/0.463
2xclANPPhosphoribosylamine--glycine ligase/0.460
4oa9ANPProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.459
2ji8FYNOxalyl-CoA decarboxylase4.1.1.80.456
2b9iADPMitogen-activated protein kinase FUS32.7.11.240.452
4h2nFAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase/0.451
5c1oANPD-alanine--D-alanine ligase/0.451
2b9fADPMitogen-activated protein kinase FUS32.7.11.240.450
2b9jADPMitogen-activated protein kinase FUS32.7.11.240.449
4l9kEHFSerum albumin/0.445
4wujFMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy/0.444
1jstATPCyclin-dependent kinase 22.7.11.220.443
3q4zANPSerine/threonine-protein kinase PAK 12.7.11.10.442
2vqdAP2Biotin carboxylase6.3.4.140.441
4ii5ADPCyclin-dependent kinase 22.7.11.220.441
5c1pADPD-alanine--D-alanine ligase/0.440