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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4oj4DIFPeroxisome proliferator-activated receptor gamma

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4oj4DIFPeroxisome proliferator-activated receptor gamma/1.000
2q61SF1Peroxisome proliferator-activated receptor gamma/0.592
2p4yC03Peroxisome proliferator-activated receptor gamma/0.577
4a4vYFDPeroxisome proliferator-activated receptor gamma/0.577
3h0aD30Peroxisome proliferator-activated receptor gamma/0.566
4a4wYFBPeroxisome proliferator-activated receptor gamma/0.561
2i4pDRHPeroxisome proliferator-activated receptor gamma/0.548
4xumIMNPeroxisome proliferator-activated receptor gamma/0.547
2q6sPLBPeroxisome proliferator-activated receptor gamma/0.546
1knuYPAPeroxisome proliferator-activated receptor gamma/0.543
2yfeYFEPeroxisome proliferator-activated receptor gamma/0.540
3cs8BRLPeroxisome proliferator-activated receptor gamma/0.538
2q59240Peroxisome proliferator-activated receptor gamma/0.535
3vjhJ35Peroxisome proliferator-activated receptor gamma/0.531
4hee14RPeroxisome proliferator-activated receptor gamma/0.529
2gtk208Peroxisome proliferator-activated receptor gamma/0.528
4xldBRLPeroxisome proliferator-activated receptor gamma/0.528
2f4bEHAPeroxisome proliferator-activated receptor gamma/0.525
4em9TCEPeroxisome proliferator-activated receptor gamma/0.525
2i4jDRJPeroxisome proliferator-activated receptor gamma/0.505
1i7iAZ2Peroxisome proliferator-activated receptor gamma/0.503
1y0s331Peroxisome proliferator-activated receptor delta/0.501
2c7xNRBCytochrome P450 monooxygenase PikC/0.500
3gw9VNILanosterol 14-alpha-demethylase/0.497
3vspEK8Peroxisome proliferator-activated receptor gamma/0.496
2i4zDRHPeroxisome proliferator-activated receptor gamma/0.495
4aw3MYVMycinamicin IV hydroxylase/epoxidase/0.494
4xuhSFIPeroxisome proliferator-activated receptor gamma/0.494
1zgyBRLPeroxisome proliferator-activated receptor gamma/0.493
2q5p241Peroxisome proliferator-activated receptor gamma/0.493
4jazSTLPeroxisome proliferator-activated receptor gamma/0.493
3nbvANPKetohexokinase/0.492
4nb6444Nuclear receptor ROR-gamma/0.491
2npaMMBPeroxisome proliferator-activated receptor alpha/0.490
3vn2TLSPeroxisome proliferator-activated receptor gamma/0.488
3sp6IL2Peroxisome proliferator-activated receptor alpha/0.486
2pobGW4Peroxisome proliferator-activated receptor gamma/0.485
2q5g1FAPeroxisome proliferator-activated receptor delta/0.485
2q8sL92Peroxisome proliferator-activated receptor gamma/0.485
3kpkFADSulfide-quinone reductase/0.485
1fm9570Peroxisome proliferator-activated receptor gamma/0.484
1p44GEQEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.484
3zk5Z18Cytochrome P450 monooxygenase PikC/0.484
4g3jVNTLanosterol 14-alpha-demethylase/0.484
4hgl0YOCasein kinase I isoform gamma-32.7.11.10.482
4j6cSTRCytochrome P450 monooxygenase/0.480
4jvf17XRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.477
2nruT12Interleukin-1 receptor-associated kinase 42.7.11.10.476
4kwi1TJReductase homolog/0.476
4q71FADBifunctional protein PutA/0.476
2y00Y01Beta-1 adrenergic receptor/0.475
3dxjNE6DNA-directed RNA polymerase subunit beta/0.475
3dxjNE6DNA-directed RNA polymerase subunit beta'/0.475
2c6hPXICytochrome P450 monooxygenase PikC/0.473
4tzt468Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.473
2hfpNSIPeroxisome proliferator-activated receptor gamma/0.472
3v9y24LPeroxisome proliferator-activated receptor gamma/0.472
4g7gVFVLanosterol 14-alpha-demethylase/0.472
3t2zFADSulfide-quinone reductase/0.471
1bygSTUTyrosine-protein kinase CSK/0.470
1jipKTN6-deoxyerythronolide B hydroxylase/0.470
3f5p741Insulin-like growth factor 1 receptor2.7.10.10.470
3ogqAB1Pol polyprotein/0.470
4h4uNDPBiphenyl dioxygenase ferredoxin reductase subunit/0.470
1fm6BRLPeroxisome proliferator-activated receptor gamma/0.469
1k6tXN1Gag-Pol polyprotein3.4.23.160.469
1qvnFRIInterleukin-2/0.469
2po7CHDFerrochelatase, mitochondrial4.99.1.10.469
3sz0FADSulfide-quinone reductase/0.469
4emaBRLPeroxisome proliferator-activated receptor gamma/0.469
3cylVITBasic phospholipase A2 homolog piratoxin-2/0.467
4fuyEK2Mitogen-activated protein kinase 12.7.11.240.467
5br4NADLactaldehyde reductase1.1.1.770.467
1k6cMK1Gag-Pol polyprotein3.4.23.160.466
2ca0PXICytochrome P450 monooxygenase PikC/0.466
2znnS44Peroxisome proliferator-activated receptor alpha/0.466
3q92XNBKetohexokinase/0.466
2zb3NDPProstaglandin reductase 21.3.1.480.465
4mq12C3Dual specificity tyrosine-phosphorylation-regulated kinase 1A2.7.12.10.465
2y01Y01Beta-1 adrenergic receptor/0.464
3i59N6RCRP-like cAMP-activated global transcriptional regulator/0.464
4q72FADBifunctional protein PutA/0.464
2hw1ANPKetohexokinase/0.463
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.463
4ly91YYGlucokinase regulatory protein/0.463
4q73FADBifunctional protein PutA/0.463
2ath3EAPeroxisome proliferator-activated receptor gamma/0.462
2y03Y01Beta-1 adrenergic receptor/0.462
3t2yFADSulfide-quinone reductase/0.462
4b7dQLECytochrome P450 monooxygenase PikC/0.462
1gqtACPRibokinase/0.461
3bva2NCGag-Pol polyprotein3.4.23.160.461
3qa2XNAKetohexokinase/0.461
4g170VNCasein kinase I isoform gamma-32.7.11.10.461
4k110J9Proto-oncogene tyrosine-protein kinase Src2.7.10.20.461
2y46MIVMycinamicin IV hydroxylase/epoxidase/0.460
3qaiXNNKetohexokinase/0.460
1hdcCBO3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.459
2nrySTUInterleukin-1 receptor-associated kinase 42.7.11.10.459
2rbeNDPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.459
3t2kFADSulfide-quinone reductase/0.459
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.459
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.459
1jvsNDP1-deoxy-D-xylulose 5-phosphate reductoisomerase1.1.1.2670.458
2y98MIVMycinamicin IV hydroxylase/epoxidase/0.458
4hfmNAP2-alkenal reductase (NADP(+)-dependent)/0.458
4j95ACPFibroblast growth factor receptor 2/0.458
1hosPHPGag-Pol polyprotein/0.457
1k6pXN3Gag-Pol polyprotein3.4.23.160.457
1xkdNAPIsocitrate dehydrogenase [NADP]/0.457
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.457
2f3kRO1Protease/0.457
2vzmNRBCytochrome P450 monooxygenase PikC/0.457
3a99ANPSerine/threonine-protein kinase pim-12.7.11.10.457
3p3zP3ZPutative cytochrome P450/0.457
3uk6ADPRuvB-like 23.6.4.120.457
4o8fBRLPeroxisome proliferator-activated receptor gamma/0.457
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.456
3el4ROCGag-Pol polyprotein3.4.23.160.456
3s3r0IWCathepsin B-like peptidase (C01 family)/0.456
4nka2K7Fibroblast growth factor receptor 1/0.456
4ye3G04Gag-Pol polyprotein3.4.23.160.456
5itzLOCTubulin beta-2B chain/0.456
1osvCHCBile acid receptor/0.455
1xddAAYIntegrin alpha-L/0.455
3fcoIIGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.455
4j6bPLOCytochrome P450 monooxygenase/0.455
4j6dTESCytochrome P450 monooxygenase/0.455
4yt5H4MH(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338/0.455
2excJNKMitogen-activated protein kinase 102.7.11.240.454
2hwrDRDPeroxisome proliferator-activated receptor gamma/0.454
3dcrKVSProtease/0.454
3l0lHC3Nuclear receptor ROR-gamma/0.454
3ssnMVIMycinamicin VI 2''-O-methyltransferase/0.454
4b7sQLECytochrome P450 monooxygenase PikC/0.454
5ajqDB8Serine/threonine-protein kinase 102.7.11.10.454
3icsADPCoenzyme A disulfide reductase/0.453
1pkfEPDEpothilone C/D epoxidase1.140.452
2y02Y01Beta-1 adrenergic receptor/0.452
3tqhNDPQuinone oxidoreductase/0.452
3vs2VSBTyrosine-protein kinase HCK2.7.10.20.452
3zuxTCHTransporter/0.452
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.452
4c4jX21Dual specificity protein kinase TTK2.7.12.10.452
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.452
1dssNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.451
1i7gAZ2Peroxisome proliferator-activated receptor alpha/0.451
1jioDEB6-deoxyerythronolide B hydroxylase/0.451
1ppjANYCytochrome b/0.451
1u7tTDT3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.451
2e9cB75Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.451
2idw017Protease/0.451
2w4iVGAGlutamate racemase/0.451
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.451
2znoS44Peroxisome proliferator-activated receptor gamma/0.451
3p99LNPLanosterol 14-alpha-demethylase/0.451
3qlrNDPDihydrofolate reductase1.5.1.30.451
3sdi3SDProteasome subunit beta type-53.4.25.10.451
3sdi3SDProteasome subunit beta type-63.4.25.10.451
3wv9FEGHmd co-occurring protein HcgE/0.451
4b7xNAPProbable oxidoreductase/0.451
4c58824Cyclin-G-associated kinase2.7.11.10.451
2znq401Peroxisome proliferator-activated receptor delta/0.450
3clyACPFibroblast growth factor receptor 2/0.450
3tvuB37Acetyl-CoA carboxylase/0.450
3uagUMAUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.450
4i22IREEpidermal growth factor receptor2.7.10.10.450
5a3bAPRSIR2 family protein/0.450
1n49RITGag-Pol polyprotein3.4.23.160.449
2vxoXMPGMP synthase [glutamine-hydrolyzing]6.3.5.20.449
3cgfJNFMitogen-activated protein kinase 102.7.11.240.449
3gcoVAL_TYR_GLN_PHESerine endoprotease DegS3.4.21.1070.449
3wmxNADNAD dependent epimerase/dehydratase/0.449
4jvb1M0Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.449
5k2dZMAAdenosine receptor A2a/0.449
1adfTADAlcohol dehydrogenase E chain1.1.1.10.448
1ie4T44Transthyretin/0.448
2rkfAB1Pol protein/0.448
3bc3OPTCathepsin L13.4.22.150.448
3fln3FNMitogen-activated protein kinase 14/0.448
4c59FEFCyclin-G-associated kinase2.7.11.10.448
4ctaATPCinA-like protein/0.448
4j5j478Gag-Pol polyprotein3.4.23.160.448
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.448
4ubsDIFPentalenic acid synthase1.14.15.110.448
4wsqKSAAP2-associated protein kinase 12.7.11.10.448
5ifyUMPGlucose-1-phosphate thymidylyltransferase/0.448
1kkq471Peroxisome proliferator-activated receptor alpha/0.447
1ohr1UNV-1 PROTEASE protein/0.447
1pjkANPCasein kinase II subunit alpha2.7.11.10.447
1q5dEPBEpothilone C/D epoxidase1.140.447
3t14FADSulfide-quinone reductase/0.447
3tl9ROCGag-Pol polyprotein3.4.23.160.447
4a99FADTetX family tetracycline inactivation enzyme/0.447
4idv13VMitogen-activated protein kinase kinase kinase 142.7.11.250.447
4iwo1H4Serine/threonine-protein kinase TBK12.7.11.10.447
4lxhC1EAlpha/beta hydrolase fold/0.447
4n6bCOAUncharacterized protein/0.447
5hs1VORLanosterol 14-alpha demethylase/0.447
1d4kPI8Gag-Pol polyprotein3.4.23.160.446
1k74544Peroxisome proliferator-activated receptor gamma/0.446
1qxlFR8Adenosine deaminase3.5.4.40.446
1uumAFIDihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.446
2h8hH8HProto-oncogene tyrosine-protein kinase Src2.7.10.20.446
2ittAEEEpidermal growth factor receptor2.7.10.10.446
2izrBRKCasein kinase I isoform gamma-32.7.11.10.446
2q5kAB1Protease/0.446
3gc8B45Mitogen-activated protein kinase 112.7.11.240.446
3gu7ADPDeath-associated protein kinase 12.7.11.10.446
3gyuDL7Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily/0.446
3i2l2NCProtease/0.446
3is9AC7Gag-Pol polyprotein2.7.7.490.446
3qlsNDPDihydrofolate reductase1.5.1.30.446
3tmz06XCytochrome P450 2B41.14.14.10.446
4aa4QC0Mitogen-activated protein kinase 14/0.446
4icyFADPgaE/0.446
4nr42LKCREB-binding protein/0.446
1bvgDMPGag-Pol polyprotein3.4.23.160.445
1xuoLA1Integrin alpha-L/0.445
1ykdCMPAdenylate cyclase/0.445
2cig1DGDihydrofolate reductase1.5.1.30.445
2ehqNAP1-pyrroline-5-carboxylate dehydrogenase/0.445
2w7xD1ASerine/threonine-protein kinase Chk22.7.11.10.445
3a1nNADNDP-sugar epimerase/0.445
3ggxGGXGag-Pol polyprotein/0.445
3i5zZ48Mitogen-activated protein kinase 12.7.11.240.445
3kpzZNEVitamin D3 receptor/0.445
3lu8IQXSerum albumin/0.445
3ncgBK1Calmodulin-domain protein kinase 1, putative/0.445
3ndxRITGag-Pol polyprotein3.4.23.160.445
3p6oETGCamphor 5-monooxygenase1.14.15.10.445
3p6pA6BCamphor 5-monooxygenase1.14.15.10.445
3v5l0G1Tyrosine-protein kinase ITK/TSK2.7.10.20.445
3zcw4A2Kinesin-like protein KIF11/0.445
4tzk641Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.445
5k2aZMAAdenosine receptor A2a/0.445
1ee0CAA2-pyrone synthase/0.444
1n4hREANuclear receptor ROR-beta/0.444
1w2xRCPAcetyl-CoA carboxylase/0.444
2c3qGTXGlutathione S-transferase theta-12.5.1.180.444
2j3iNAPNADPH-dependent oxidoreductase 2-alkenal reductase1.3.1.740.444
2nnpROCProtease/0.444
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.444
2y8qADP5'-AMP-activated protein kinase subunit gamma-1/0.444
3d7kD7KBenzaldehyde lyase/0.444
3kduNKSPeroxisome proliferator-activated receptor alpha/0.444
3m6iNADL-arabinitol 4-dehydrogenase1.1.1.120.444
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.444
3nwq2NCGag-Pol polyprotein3.4.23.160.444
3nwxKVSGag-Pol polyprotein3.4.23.160.444
3upjU03Gag-Pol polyprotein/0.444
3w2o03PEpidermal growth factor receptor2.7.10.10.444
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.444
4cqlNADEstradiol 17-beta-dehydrogenase 81.1.1.620.444
4mcv29KProto-oncogene tyrosine-protein kinase Src2.7.10.20.444
4oavACP2-5A-dependent ribonuclease3.1.260.444
4qgiROCGag-Pol polyprotein3.4.23.160.444
1hvsA77Gag-Pol polyprotein/0.443
1k6vXN2Gag-Pol polyprotein3.4.23.160.443
1rkxNADCDP-D-glucose-4,6-dehydratase/0.443
1vikBAYGag-Pol polyprotein/0.443
1zmcNADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.443
2fdd385Pol protein/0.443
2p33J07Mitogen-activated protein kinase 102.7.11.240.443
2ph5NADHomospermidine synthase/0.443
3a9wNADNDP-sugar epimerase/0.443
3gc9B45Mitogen-activated protein kinase 112.7.11.240.443
3hllI45Mitogen-activated protein kinase 14/0.443
3i6oGR6Gag-Pol polyprotein3.4.23.160.443
3mqe416Prostaglandin G/H synthase 21.14.99.10.443
4ambDUDPutative glycosyl transferase/0.443
4anwO92Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.443
4bb3KKAIsopenicillin N synthase1.21.3.10.443
4ix5ANPUncharacterized protein/0.443
4j54G52Gag-Pol polyprotein3.4.23.160.443
1bxoPP7Penicillopepsin-13.4.23.200.442
1cqp803Integrin alpha-L/0.442
1disBDMDihydrofolate reductase1.5.1.30.442
1hvjA78Gag-Pol polyprotein/0.442
2qhcAB1Protease/0.442
3caqNDP3-oxo-5-beta-steroid 4-dehydrogenase/0.442
3el8PD5Proto-oncogene tyrosine-protein kinase Src2.7.10.20.442
3ggpNADPrephenate dehydrogenase/0.442
3gobHXXDdmC/0.442
3hp552PMitogen-activated protein kinase 14/0.442
3so9017Pol protein/0.442
3t1tGDPProbable gliding protein mglA/0.442
3t8xT8XT-cell surface glycoprotein CD1b/0.442
3th8TH9Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.442
3tz3B36Acetyl-CoA carboxylase/0.442
4elf35IDihydrofolate reductase/0.442
4g160VMCasein kinase I isoform gamma-32.7.11.10.442
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.442
4r21STRCytochrome P450 family 17 polypeptide 2/0.442
4yr9NADL-threonine 3-dehydrogenase, mitochondrial1.1.1.1030.442
4yuqKS1Calmodulin-like domain protein kinase/0.442
5bp9SAHPutative methyltransferase protein/0.442
5k2bZMAAdenosine receptor A2a/0.442
1ida0POGag-Pol polyprotein3.4.23.470.441
1ivq0PXGag-Pol polyprotein/0.441
1ndeMONEstrogen receptor beta/0.441
1yonA2R2-dehydropantoate 2-reductase1.1.1.1690.441
2hw2RFPRifampin ADP-ribosyl transferase/0.441
2vnaNAPProstaglandin reductase 21.3.1.480.441
2y05NAPProstaglandin reductase 1/0.441
3a3yOBNSodium/potassium-transporting ATPase subunit alpha/0.441
3apfBMWPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.441
3f47I2C5,10-methenyltetrahydromethanopterin hydrogenase1.12.98.20.441
3fi4FI4Mitogen-activated protein kinase 14/0.441
3gggNADPrephenate dehydrogenase/0.441
3jskAHZThiamine thiazole synthase/0.441
3opdHIEHeat shock protein 83/0.441
3syiFADSulfide-quinone reductase/0.441
3w1f1O5Dual specificity protein kinase TTK2.7.12.10.441
3wxyCOAUncharacterized protein/0.441
4lj9ACPChaperone protein ClpB/0.441
4oauADP2-5A-dependent ribonuclease3.1.260.441
4ryvZEAProtein LlR18A/0.441
1j39UPGDNA beta-glucosyltransferase/0.440
1muiAB1Protease/0.440
1npa3NHGag-Pol polyprotein3.4.23.160.440
1npwLGZGag-Pol polyprotein3.4.23.160.440
2aidTHKGag-Pol polyprotein3.4.23.160.440
2ft9CHDFatty acid-binding protein 2, liver/0.440
2uxuNARHTH-type transcriptional regulator TtgR/0.440
2xc3RT8Steroid C26-monooxygenase1.14.13.1410.440
2yyiFAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component1.14.14.90.440
3a4oSTUTyrosine-protein kinase Lyn2.7.10.20.440
3cyxROCGag-Pol polyprotein3.4.23.160.440
3dckKVIProtease/0.440
3h0sB38Acetyl-CoA carboxylase/0.440
3hazFADBifunctional protein PutA/0.440
3mdmFJZCholesterol 24-hydroxylase/0.440
3mxdK53Gag-Pol polyprotein3.4.23.160.440
4a95NHWGlycylpeptide N-tetradecanoyltransferase/0.440
4bkz1WSMaternal embryonic leucine zipper kinase2.7.11.10.440
4ez72ANCyclin-dependent kinase 22.7.11.220.440
4f9mFCMPeroxisome proliferator-activated receptor gamma/0.440
4jx1CAHCamphor 5-monooxygenase1.14.15.10.440
4kuhCAA3-hydroxybutyryl-CoA dehydrogenase/0.440
4o761M3Bromodomain-containing protein 4/0.440