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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4o8aFADBifunctional protein PutA1.2.1.88

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4o8aFADBifunctional protein PutA1.2.1.881.000
1tj0FADBifunctional protein PutA1.5.5.20.786
1tj2FADBifunctional protein PutA1.5.5.20.758
1tj1FADBifunctional protein PutA1.5.5.20.739
3e2sFADBifunctional protein PutA1.5.5.20.702
2fzmFADBifunctional protein PutA1.5.5.20.638
2fznFADBifunctional protein PutA1.5.5.20.582
4q72FADBifunctional protein PutA/0.561
3hazFADBifunctional protein PutA/0.557
4q73FADBifunctional protein PutA/0.554
4q71FADBifunctional protein PutA/0.544
4nmdFDABifunctional protein PutA/0.494