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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4o2z046Mitogen-activated protein kinase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4o2z046Mitogen-activated protein kinase/1.000
4c8b0LIReceptor-interacting serine/threonine-protein kinase 22.7.11.10.478
4agwNG7Proto-oncogene tyrosine-protein kinase Src2.7.10.20.475
2oiqSTIProto-oncogene tyrosine-protein kinase Src2.7.10.20.461
3dtwA96Vascular endothelial growth factor receptor 22.7.10.10.456
1iepSTITyrosine-protein kinase ABL12.7.10.20.447
2hyySTITyrosine-protein kinase ABL12.7.10.20.443
3b8q900Vascular endothelial growth factor receptor 22.7.10.10.443
2qu6857Vascular endothelial growth factor receptor 22.7.10.10.440