scPDB - Distribution of Binding site Similarity values of 4nmd entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4nmd	FDA	Bifunctional protein PutA

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
4nmd	FDA	Bifunctional protein PutA	/	1.000
4q73	FAD	Bifunctional protein PutA	/	0.545
4o8a	FAD	Bifunctional protein PutA	1.2.1.88	0.537
1tj2	FAD	Bifunctional protein PutA	1.5.5.2	0.532
4q72	FAD	Bifunctional protein PutA	/	0.531
4q71	FAD	Bifunctional protein PutA	/	0.519
2fzm	FAD	Bifunctional protein PutA	1.5.5.2	0.518
1tj1	FAD	Bifunctional protein PutA	1.5.5.2	0.512
1tj0	FAD	Bifunctional protein PutA	1.5.5.2	0.509
2fzn	FAD	Bifunctional protein PutA	1.5.5.2	0.489
3haz	FAD	Bifunctional protein PutA	/	0.472
3e2s	FAD	Bifunctional protein PutA	1.5.5.2	0.448