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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4nhmUN9Prolyl 3,4-dihydroxylase TPA11.14.11

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4nhmUN9Prolyl 3,4-dihydroxylase TPA11.14.111.000
4nhkPD2Prolyl 3,4-dihydroxylase TPA11.14.110.584
4nhyPD2Prolyl 3-hydroxylase OGFOD11.14.110.521
2zsaADPPantothenate kinase2.7.1.330.478
3aezGDPPantothenate kinase2.7.1.330.458
3oqkS52Renin3.4.23.150.448
3zeiAWHO-acetylserine sulfhydrylase/0.447
3oqfS51Renin3.4.23.150.446
3p62FMNPentaerythritol tetranitrate reductase/0.446
5c1mCLRMu-type opioid receptor/0.444
1h50FMNPentaerythritol tetranitrate reductase/0.440
3dd125DGlycogen phosphorylase, liver form2.4.1.10.440