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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4n1fCZHObelin

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4n1fCZHObelin/1.000
1qv1CZHObelin/0.647
4mrxCZHObelin/0.619
1jf0CZHObelin/0.616
1uhjCZBAequorin-2/0.611
4nqgCZHMitrocomin/0.611
1uhhCZPAequorin-2/0.605
1jf2CZHObelin/0.598
1qv0CZHObelin/0.591
1el4CTZObelin/0.590
1ej3CZHAequorin-2/0.587
1s36CEIObelin/0.544
4l5b1UXDeoxycytidine kinase2.7.1.740.476
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.472
4jln18VDeoxycytidine kinase2.7.1.740.468
1yhjR6CPyridoxal kinase2.7.1.350.461
1zgcA2EAcetylcholinesterase3.1.1.70.460
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.459
1q0rAKTAclacinomycin methylesterase RdmC3.1.1.950.458
3h3t16HCollagen type IV alpha-3-binding protein/0.456
4jlm1NNDeoxycytidine kinase2.7.1.740.456
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.453
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.447
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.446
3dynPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.443
3tdaPN0Cytochrome P450 2D6/0.443
7catNDPCatalase1.11.1.60.442
3abaFLICytochrome P450/0.441
4rbs0RVMetallo-beta-lactamase type 2/0.440