Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4myq19TcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.53

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4myq19TcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.531.000
3o56ZG1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.513
3w5eNVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.512
3g58988cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.503
3g4gD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.495
3v94WYQPhosphodiesterase/0.492
3wd9QPCcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.491
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.489
3g4iD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.489
1xonPILcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.481
1xoqROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.481
1tbbROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.477
3g45988cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.476
1xomCIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.473
3k4s0MOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.472
4ddl0JQcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.469
3sl6JN8cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.460
3sni546cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.455
1y2k7DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.454
3g4lROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.453
4muw2F4cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.453
1q9mROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.449
4hf415HcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.448
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.445
3o57ZG2cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.444
1oynROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.443
1y2d4DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.442
2fm0M98cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.442
1y2c3DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.440