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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4mlp2CXCryptochrome-2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4mlp2CXCryptochrome-2/1.000
4i6gFADCryptochrome-2/0.494
2g247IGRenin3.4.23.150.463
1tezFADDeoxyribodipyrimidine photo-lyase4.1.99.30.454
1np7FADCryptochrome DASH/0.453
1dnpFADDeoxyribodipyrimidine photo-lyase4.1.99.30.449
1owmFADDeoxyribodipyrimidine photo-lyase4.1.99.30.449
2vtbFADCryptochrome DASH, chloroplastic/mitochondrial/0.449
1owoFADDeoxyribodipyrimidine photo-lyase4.1.99.30.447
2ikuLIYRenin3.4.23.150.447
2wb2FADRE11660p/0.446
1ownFADDeoxyribodipyrimidine photo-lyase4.1.99.30.445
2wq6FADRE11660p/0.443
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.442
1owlFADDeoxyribodipyrimidine photo-lyase4.1.99.30.442
2ijgFADCryptochrome DASH, chloroplastic/mitochondrial/0.442
2wq7FADRE11660p/0.442
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.442