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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4mk828QGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4mk828QGenome polyprotein2.7.7.481.000
3ska053Genome polyprotein2.7.7.480.567
3tyvHI3Genome polyprotein2.7.7.480.551
4mk728OGenome polyprotein2.7.7.480.551
4ih71ERGenome polyprotein2.7.7.480.540
3bsa1PDGenome polyprotein2.7.7.480.538
3u4o08EGenome polyprotein2.7.7.480.536
3cdeN3HGenome polyprotein2.7.7.480.525
3g86T18Genome polyprotein2.7.7.480.523
2gc8885Polyprotein/0.520
3upi0C2Genome polyprotein2.7.7.480.518
3h5uH5UGenome polyprotein2.7.7.480.516
3uph0C1Genome polyprotein2.7.7.480.514
4ih61EPGenome polyprotein2.7.7.480.514
1z4uPH9Polyprotein/0.513
3cvkN34Genome polyprotein2.7.7.480.508
3golXNDGenome polyprotein2.7.7.480.504
4iz02BIGenome polyprotein2.7.7.480.504
4mk928RGenome polyprotein2.7.7.480.503
3d5m4MSGenome polyprotein2.7.7.480.502
4eaw0NQGenome polyprotein2.7.7.480.501
3gnwXNCGenome polyprotein2.7.7.480.498
2fvc888Polyprotein/0.497
3csoXNIGenome polyprotein2.7.7.480.494
3e51N35Genome polyprotein2.7.7.480.491
3hkyIX6Genome polyprotein2.7.7.480.487
3ske054Genome polyprotein2.7.7.480.487
3h5sH5SGenome polyprotein2.7.7.480.486
3cwj321Genome polyprotein2.7.7.480.481
3fqk79ZGenome polyprotein2.7.7.480.481
3gnvXNZGenome polyprotein2.7.7.480.477
3co93MSGenome polyprotein2.7.7.480.476
2yoj8Y6Genome polyprotein2.7.7.480.472
3h98B5PGenome polyprotein2.7.7.480.467
1yvfPH7Polyprotein/0.453