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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4mk728OGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4mk728OGenome polyprotein2.7.7.481.000
4mk928RGenome polyprotein2.7.7.480.626
3u4o08EGenome polyprotein2.7.7.480.623
3tyvHI3Genome polyprotein2.7.7.480.612
3uph0C1Genome polyprotein2.7.7.480.602
3h59H59Genome polyprotein2.7.7.480.582
4ih71ERGenome polyprotein2.7.7.480.581
4ih61EPGenome polyprotein2.7.7.480.569
3golXNDGenome polyprotein2.7.7.480.564
2yoj8Y6Genome polyprotein2.7.7.480.559
3g86T18Genome polyprotein2.7.7.480.553
3d5m4MSGenome polyprotein2.7.7.480.546
3upi0C2Genome polyprotein2.7.7.480.543
3ska053Genome polyprotein2.7.7.480.542
3gnvXNZGenome polyprotein2.7.7.480.540
3h5sH5SGenome polyprotein2.7.7.480.539
3h5uH5UGenome polyprotein2.7.7.480.537
4mk828QGenome polyprotein2.7.7.480.536
3cdeN3HGenome polyprotein2.7.7.480.532
3csoXNIGenome polyprotein2.7.7.480.529
4iz02BIGenome polyprotein2.7.7.480.528
3co93MSGenome polyprotein2.7.7.480.527
3cwj321Genome polyprotein2.7.7.480.526
2gc8885Polyprotein/0.525
3ske054Genome polyprotein2.7.7.480.525
4eaw0NQGenome polyprotein2.7.7.480.525
3bsa1PDGenome polyprotein2.7.7.480.521
3d28B34Genome polyprotein2.7.7.480.519
3h2lYAKGenome polyprotein2.7.7.480.519
2fvc888Polyprotein/0.506
1z4uPH9Polyprotein/0.500
3gnwXNCGenome polyprotein2.7.7.480.493
1yvfPH7Polyprotein/0.490
3cvkN34Genome polyprotein2.7.7.480.480
3e51N35Genome polyprotein2.7.7.480.479
3br9DEYGenome polyprotein2.7.7.480.468
3h98B5PGenome polyprotein2.7.7.480.466
3fqk79ZGenome polyprotein2.7.7.480.445